Variant report

Variant	rs10232276
Chromosome Location	chr7:126583521-126583522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126577088..126579543-chr7:126581963..126584921,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1010517	1.00[YRI][hapmap]
rs10487463	0.87[LWK][hapmap]
rs11563513	0.80[YRI][hapmap]
rs11563801	0.87[LWK][hapmap]
rs11563808	0.89[EUR][1000 genomes]
rs13224055	0.90[EUR][1000 genomes]
rs13224108	0.95[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs1361965	1.00[YRI][hapmap]
rs1361968	1.00[YRI][hapmap]
rs1419438	0.95[LWK][hapmap];0.94[MKK][hapmap];0.80[YRI][hapmap]
rs1419468	0.96[YRI][hapmap]
rs1419470	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs1419471	0.92[LWK][hapmap];0.94[MKK][hapmap]
rs17685327	0.84[EUR][1000 genomes]
rs2022072	0.93[YRI][hapmap]
rs2106189	1.00[CHB][hapmap]
rs2188188	1.00[YRI][hapmap]
rs2188189	0.95[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs2237776	0.87[LWK][hapmap]
rs34682508	0.94[GIH][hapmap];0.83[TSI][hapmap]
rs3808136	0.96[YRI][hapmap]
rs4728057	0.93[ASW][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap]
rs61755388	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv608378	chr7:126570120-126597132	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10232276	OPRM1	trans	parietal	SCAN
rs10232276	POT1	cis	cerebellum	SCAN
rs10232276	ZC3HC1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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