Variant report

Variant	rs1023465
Chromosome Location	chrX:78217459-78217460
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11795579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5912736	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs5959237	0.88[JPT][hapmap]
rs6618868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78213200-78219800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chrX:78214600-78218200	Strong transcription	Primary T cells fromperipheralblood	blood
3	chrX:78214800-78218400	ZNF genes & repeats	GM12878-XiMat	blood
4	chrX:78215000-78219000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chrX:78215400-78217800	Weak transcription	Spleen	Spleen
6	chrX:78215600-78217800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chrX:78215600-78218000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chrX:78215600-78218000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chrX:78216000-78218000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chrX:78216000-78218000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chrX:78216600-78218000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chrX:78216800-78218000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chrX:78217000-78218000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chrX:78217000-78221200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chrX:78217000-78221600	Weak transcription	Primary B cells from cord blood	blood
16	chrX:78217200-78218000	Strong transcription	Primary B cells from peripheral blood	blood
17	chrX:78217200-78218800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chrX:78217200-78219200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chrX:78217200-78219600	Weak transcription	Fetal Thymus	thymus
20	chrX:78217200-78220400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chrX:78217400-78224200	Weak transcription	Primary T cells from cord blood	blood

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