Variant report

Variant	rs10236552
Chromosome Location	chr7:104545663-104545664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104543746..104545822-chr7:104551273..104553453,2	K562	blood:
2	chr7:104545063..104548248-chr7:104548841..104552700,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243352	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10216243	0.83[ASN][1000 genomes]
rs10226456	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10226802	0.85[EUR][1000 genomes]
rs10235696	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10237433	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10238498	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10243336	0.85[EUR][1000 genomes]
rs10243529	0.85[EUR][1000 genomes]
rs10247246	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10250365	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10253341	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10257360	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10259925	0.85[EUR][1000 genomes]
rs10262655	0.85[EUR][1000 genomes]
rs10266362	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10272668	0.85[EUR][1000 genomes]
rs10273609	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10274240	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10280365	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10281485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10953454	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10953455	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10953457	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12534673	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12535201	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12537945	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12670275	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12672211	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12705281	0.85[EUR][1000 genomes]
rs12705282	0.85[EUR][1000 genomes]
rs12705285	0.85[EUR][1000 genomes]
rs13225632	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13228977	0.81[ASN][1000 genomes]
rs1468813	0.85[EUR][1000 genomes]
rs17777379	0.85[EUR][1000 genomes]
rs17777439	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2285533	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28478615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28546781	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28587189	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34083033	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34171467	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34439336	0.85[EUR][1000 genomes]
rs35146170	0.85[EUR][1000 genomes]
rs35324592	0.85[EUR][1000 genomes]
rs35337480	0.85[EUR][1000 genomes]
rs35756879	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35894637	0.92[ASN][1000 genomes]
rs35988800	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4351347	0.80[ASN][1000 genomes]
rs6949139	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6968540	0.90[ASN][1000 genomes]
rs71562620	0.85[EUR][1000 genomes]
rs7779117	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7781864	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104535000-104557000	Weak transcription	Fetal Kidney	kidney
2	chr7:104538200-104546600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:104541800-104546000	Strong transcription	Fetal Intestine Small	intestine
4	chr7:104542400-104552400	Weak transcription	Pancreas	Pancrea
5	chr7:104544000-104546200	Weak transcription	Right Atrium	heart
6	chr7:104545200-104546600	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links