Variant report

Variant	rs10236609
Chromosome Location	chr7:137660413-137660414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:137660078..137662133-chr7:137665417..137668053,2	K562	blood:
2	chr7:137648747..137651155-chr7:137659021..137663110,4	K562	blood:
3	chr7:137659274..137662118-chr7:137675099..137677670,2	K562	blood:
4	chr7:137659697..137661457-chr7:137662836..137664690,2	K562	blood:
5	chr7:137658632..137660691-chr7:137663264..137665632,2	MCF-7	breast:
6	chr7:137659679..137661710-chr7:137685362..137687589,2	K562	blood:
7	chr7:137648747..137651155-chr7:137659878..137663110,4	K562	blood:
8	chr7:137652817..137656770-chr7:137658404..137661649,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000182158	Chromatin interaction
ENSG00000122787	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10232506	1.00[AMR][1000 genomes]
rs10235317	1.00[AMR][1000 genomes]
rs10242671	1.00[AMR][1000 genomes]
rs10250005	1.00[AMR][1000 genomes]
rs10258577	1.00[AMR][1000 genomes]
rs10264216	1.00[AMR][1000 genomes]
rs10268709	1.00[AMR][1000 genomes]
rs10270505	1.00[AMR][1000 genomes]
rs10276142	1.00[AMR][1000 genomes]
rs10279427	1.00[AMR][1000 genomes]
rs13362852	1.00[AMR][1000 genomes]
rs28675865	1.00[AMR][1000 genomes]
rs28687061	1.00[AMR][1000 genomes]
rs28735498	1.00[AMR][1000 genomes]
rs28841352	1.00[AMR][1000 genomes]
rs73732228	1.00[AMR][1000 genomes]
rs73732229	1.00[AMR][1000 genomes]
rs7810602	1.00[AMR][1000 genomes]
rs9655904	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9656503	1.00[AMR][1000 genomes]
rs9692029	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137635200-137663400	Weak transcription	Primary B cells from cord blood	blood
2	chr7:137651400-137675200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:137652200-137672200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr7:137652600-137672600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:137652800-137662800	Weak transcription	Stomach Mucosa	stomach
6	chr7:137652800-137663000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:137652800-137663200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:137652800-137663200	Weak transcription	Spleen	Spleen
9	chr7:137652800-137669800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:137652800-137670000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:137652800-137674400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:137652800-137674800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:137652800-137677600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr7:137653400-137661000	Weak transcription	Pancreas	Pancrea
15	chr7:137654000-137674200	Weak transcription	NHEK	skin
16	chr7:137655600-137660800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:137655600-137663200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr7:137655600-137665800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:137655600-137667000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:137655800-137661600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:137655800-137662200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:137655800-137662400	Weak transcription	Gastric	stomach
23	chr7:137655800-137662600	Weak transcription	HMEC	breast
24	chr7:137655800-137664600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:137655800-137665600	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr7:137655800-137666800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:137656000-137660800	Weak transcription	Placenta	Placenta
28	chr7:137656400-137662200	Weak transcription	HUVEC	blood vessel
29	chr7:137656400-137665600	Weak transcription	Colonic Mucosa	Colon
30	chr7:137656600-137661600	Weak transcription	A549	lung
31	chr7:137657000-137660800	Weak transcription	Liver	Liver
32	chr7:137657200-137662800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr7:137657600-137661400	Enhancers	Brain Substantia Nigra	brain
34	chr7:137657600-137662200	Enhancers	Rectal Smooth Muscle	rectum
35	chr7:137658000-137661800	Enhancers	Ovary	ovary
36	chr7:137658000-137662200	Enhancers	Brain Cingulate Gyrus	brain
37	chr7:137658200-137661400	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr7:137658200-137661800	Enhancers	Brain Hippocampus Middle	brain
39	chr7:137658200-137664600	Weak transcription	Primary B cells from peripheral blood	blood
40	chr7:137658400-137661800	Weak transcription	Fetal Intestine Small	intestine
41	chr7:137658400-137662000	Enhancers	Fetal Stomach	stomach
42	chr7:137658400-137662400	Weak transcription	Lung	lung
43	chr7:137658600-137660600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:137658600-137661800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr7:137658600-137664800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr7:137658600-137670200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr7:137658800-137661400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr7:137658800-137663600	Enhancers	NHLF	lung
49	chr7:137659000-137663600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr7:137659200-137661400	Enhancers	Brain Angular Gyrus	brain

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