Variant report

Variant	rs1023847
Chromosome Location	chr5:151599118-151599119
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10035750	1.00[ASN][1000 genomes]
rs10043946	0.86[ASN][1000 genomes]
rs10055017	0.86[ASN][1000 genomes]
rs10064138	1.00[ASN][1000 genomes]
rs10065021	1.00[ASN][1000 genomes]
rs1023845	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1023846	0.93[ASN][1000 genomes]
rs10515651	0.80[ASN][1000 genomes]
rs1124773	0.93[ASN][1000 genomes]
rs1422927	0.86[ASN][1000 genomes]
rs1574034	0.93[ASN][1000 genomes]
rs17112916	1.00[ASN][1000 genomes]
rs1895312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1895313	0.93[ASN][1000 genomes]
rs1895314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1946487	1.00[ASN][1000 genomes]
rs2034583	1.00[ASN][1000 genomes]
rs28478867	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151598000-151599200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:151598600-151603200	Weak transcription	Right Ventricle	heart
3	chr5:151598800-151600400	Weak transcription	Adipose Nuclei	Adipose
4	chr5:151598800-151603000	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links