Variant report

Variant	rs10239355
Chromosome Location	chr9:102204923-102204924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10500116	1.00[ASN][1000 genomes]
rs1362053	0.89[ASN][1000 genomes]
rs1362054	0.89[ASN][1000 genomes]
rs17148684	0.96[ASN][1000 genomes]
rs2079188	0.93[ASN][1000 genomes]
rs2524893	0.81[ASN][1000 genomes]
rs2692073	0.89[ASN][1000 genomes]
rs3847094	1.00[ASN][1000 genomes]
rs3993615	0.81[ASN][1000 genomes]
rs61570519	1.00[ASN][1000 genomes]
rs702455	0.89[ASN][1000 genomes]
rs702456	0.89[ASN][1000 genomes]
rs702457	0.89[ASN][1000 genomes]
rs702458	0.89[ASN][1000 genomes]
rs792159	1.00[ASN][1000 genomes]
rs792415	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv527165	chr9:102194921-102214169	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv6636	chr9:102197504-102242604	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102197000-102207600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:102201000-102207000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:102202800-102206600	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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