Variant report
| Variant | rs10241081 |
|---|---|
| Chromosome Location | chr7:147723395-147723396 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10226093 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10227836 | 0.90[EUR][1000 genomes] |
| rs10236799 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10250801 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10257780 | 0.90[EUR][1000 genomes] |
| rs10270437 | 0.90[EUR][1000 genomes] |
| rs10270778 | 0.90[EUR][1000 genomes] |
| rs10273095 | 0.90[EUR][1000 genomes] |
| rs10273493 | 1.00[EUR][1000 genomes] |
| rs10276268 | 0.82[EUR][1000 genomes] |
| rs10276274 | 0.90[EUR][1000 genomes] |
| rs10279557 | 1.00[EUR][1000 genomes] |
| rs11972972 | 1.00[EUR][1000 genomes] |
| rs11974390 | 0.90[EUR][1000 genomes] |
| rs11976838 | 1.00[EUR][1000 genomes] |
| rs11979926 | 0.82[EUR][1000 genomes] |
| rs28373395 | 0.90[EUR][1000 genomes] |
| rs28377968 | 0.90[EUR][1000 genomes] |
| rs28394241 | 0.90[EUR][1000 genomes] |
| rs28554472 | 0.90[EUR][1000 genomes] |
| rs28594409 | 0.90[EUR][1000 genomes] |
| rs28693625 | 0.90[EUR][1000 genomes] |
| rs57055307 | 1.00[EUR][1000 genomes] |
| rs58083908 | 1.00[EUR][1000 genomes] |
| rs58092267 | 1.00[EUR][1000 genomes] |
| rs58526779 | 0.90[EUR][1000 genomes] |
| rs58848818 | 1.00[EUR][1000 genomes] |
| rs60119393 | 1.00[EUR][1000 genomes] |
| rs60692572 | 1.00[EUR][1000 genomes] |
| rs6970931 | 1.00[EUR][1000 genomes] |
| rs73464297 | 0.90[EUR][1000 genomes] |
| rs73466110 | 0.90[EUR][1000 genomes] |
| rs73466115 | 1.00[EUR][1000 genomes] |
| rs73466190 | 1.00[EUR][1000 genomes] |
| rs73466195 | 1.00[EUR][1000 genomes] |
| rs73468119 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73468120 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023913 | chr7:147521075-147806318 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026058 | chr7:147521109-147783042 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv539179 | chr7:147521109-147783042 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv934002 | chr7:147521110-147807705 | Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv1017610 | chr7:147523752-147806427 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:147719200-147723800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
