Variant report

Variant	rs10241173
Chromosome Location	chr7:124453258-124453259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124446535..124448384-chr7:124452586..124455044,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1009450	0.82[CEU][hapmap]
rs10224463	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10225552	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10226033	0.88[CEU][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10228201	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10230610	0.95[CEU][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10233385	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10233596	0.89[ASN][1000 genomes]
rs10240673	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10244817	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10246424	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10249722	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10253613	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10264060	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10265763	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10271646	0.95[CEU][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10281582	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10464529	0.91[CEU][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12111865	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1541416	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1541418	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17246404	0.91[CEU][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17325193	0.85[CEU][hapmap]
rs2107939	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2170352	0.82[CEU][hapmap]
rs2239532	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286175	0.95[CEU][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2402751	0.94[ASN][1000 genomes]
rs2402752	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28523990	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28622327	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28638102	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28728448	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28844358	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34986416	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36045816	0.89[ASN][1000 genomes]
rs3925331	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4473974	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4532534	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55964341	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56313563	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56321835	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56356267	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56387611	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59294613	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59670428	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66492217	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66513837	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66526112	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66665074	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66922607	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67084428	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67146030	0.89[ASN][1000 genomes]
rs67552763	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67585224	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67939974	0.89[ASN][1000 genomes]
rs68007199	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68091803	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6943653	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6952721	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6971909	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs720613	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs720614	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs722560	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs727505	0.91[CEU][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7777947	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7790856	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7791430	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7795943	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7801661	0.91[CEU][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7806680	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9655845	0.90[CEU][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs988699	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs989177	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124445000-124463800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:124445800-124454400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:124450200-124454600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:124450800-124453400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:124450800-124453400	Weak transcription	Adipose Nuclei	Adipose
6	chr7:124450800-124454200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:124450800-124467000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:124451000-124454200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:124451000-124461800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:124451200-124461600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:124451400-124454200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:124451400-124463600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:124451600-124466600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:124452400-124453400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:124452800-124453800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr7:124452800-124453800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:124452800-124475000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links