Variant report

Variant	rs10242028
Chromosome Location	chr7:102527785-102527786
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102527046..102528879-chr7:102528977..102531238,2	MCF-7	breast:
2	chr7:102526206..102528003-chr7:102535680..102538379,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10228495	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs10241865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250490	0.96[ASN][1000 genomes]
rs10257317	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10271157	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271184	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10273725	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10279449	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10808120	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10953374	0.82[EUR][1000 genomes]
rs1100046	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11514917	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs11972261	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs11976237	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs11978799	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11981980	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12537977	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs12666317	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs12668434	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs13233521	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs13242493	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1541519	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1608651	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs17136090	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1829957	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs2190673	0.94[ASN][1000 genomes]
rs2411046	0.87[CEU][hapmap]
rs2411056	0.88[ASN][1000 genomes]
rs2411059	0.87[ASN][1000 genomes]
rs28856331	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs41501847	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4296965	0.87[ASN][1000 genomes]
rs4620204	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4729860	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs56269620	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57253646	0.81[ASN][1000 genomes]
rs59544295	0.89[ASN][1000 genomes]
rs59709436	0.89[ASN][1000 genomes]
rs6465876	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6465878	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6465880	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946773	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6947403	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs6949150	0.82[JPT][hapmap]
rs6949391	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6953980	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6960428	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6969054	0.95[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7778418	0.90[CEU][hapmap];0.85[JPT][hapmap]
rs7779145	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7780405	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs7780981	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7782908	0.91[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs7785272	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7789252	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7794668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7800548	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7804322	0.89[ASN][1000 genomes]
rs847646	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs847647	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs847648	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs847649	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs847656	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs847658	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs865865	0.86[ASN][1000 genomes]
rs869332	0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9718453	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv470382	chr7:102375663-102538515	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv608057	chr7:102440184-102538515	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv5880	chr7:102505158-102550471	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102501200-102530800	Weak transcription	Ovary	ovary
2	chr7:102508000-102529200	Weak transcription	Fetal Lung	lung
3	chr7:102513800-102531600	Weak transcription	Fetal Brain Male	brain
4	chr7:102517000-102549600	Weak transcription	Gastric	stomach
5	chr7:102517200-102529600	Weak transcription	NHLF	lung
6	chr7:102517200-102578200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:102522600-102529600	Weak transcription	Fetal Stomach	stomach
8	chr7:102522600-102549200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:102524200-102529000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:102524200-102529000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:102524200-102529600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:102524800-102528200	Weak transcription	A549	lung
13	chr7:102524800-102528600	Weak transcription	HUVEC	blood vessel
14	chr7:102524800-102528800	Weak transcription	Stomach Mucosa	stomach
15	chr7:102526000-102530800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:102526200-102528600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr7:102526600-102528200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr7:102527000-102528000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:102527200-102528200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:102527400-102528000	Enhancers	Primary hematopoietic stem cells	blood
21	chr7:102527400-102528600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:102527600-102528400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr7:102527600-102530800	Strong transcription	K562	blood

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