Variant report

Variant	rs10242387
Chromosome Location	chr7:146110348-146110349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10224007	0.87[CEU][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap]
rs10225925	1.00[CHB][hapmap]
rs10226676	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10227977	1.00[CHB][hapmap]
rs10231549	1.00[CHB][hapmap]
rs10231672	1.00[CHB][hapmap]
rs10235457	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs10237250	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[TSI][hapmap]
rs10245855	1.00[CHB][hapmap]
rs10246857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap]
rs10248899	1.00[CHB][hapmap]
rs10249269	1.00[CHB][hapmap]
rs10256837	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10258224	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10260495	1.00[CHB][hapmap]
rs10269297	1.00[CHB][hapmap]
rs10275558	1.00[CHB][hapmap]
rs10280011	1.00[CHB][hapmap]
rs10487935	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11977983	1.00[CHB][hapmap]
rs11978155	1.00[CHB][hapmap]
rs11980503	1.00[CHB][hapmap]
rs12113340	1.00[CHB][hapmap]
rs1358079	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1358083	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1403008	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1403009	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1403010	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1526162	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1639456	1.00[CHB][hapmap]
rs1639461	1.00[CHD][hapmap]
rs1639478	1.00[CEU][hapmap]
rs1639489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17170042	1.00[CHB][hapmap]
rs17170050	1.00[CHB][hapmap]
rs17170051	1.00[CHB][hapmap]
rs17170055	1.00[CHB][hapmap]
rs17170058	1.00[CHB][hapmap]
rs17170073	1.00[CHB][hapmap]
rs17170092	0.85[CEU][hapmap]
rs1718073	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1718074	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1718075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[TSI][hapmap]
rs1718077	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[TSI][hapmap]
rs1718078	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1718081	0.92[EUR][1000 genomes]
rs1718082	0.92[EUR][1000 genomes]
rs1724526	1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs1724527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes]
rs1724529	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1724531	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1724535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs1860683	1.00[CHB][hapmap]
rs2535752	0.92[EUR][1000 genomes]
rs60409856	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73738756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7778058	1.00[CHB][hapmap]
rs802196	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889389	chr7:145998111-146121539	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1024679	chr7:146091479-146248268	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1017138	chr7:146102286-146318562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146109000-146110600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr7:146109200-146110600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:146109200-146112000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:146109400-146112400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:146109400-146112600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:146109400-146112600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:146109400-146112800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:146109600-146112400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:146110000-146111200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:146110200-146110400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:146110200-146110400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links