Variant report

Variant	rs10242752
Chromosome Location	chr7:103779450-103779451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103769885..103772805-chr7:103778154..103780939,3	K562	blood:
2	chr7:103754828..103757477-chr7:103778721..103780963,2	MCF-7	breast:
3	chr7:103774534..103776451-chr7:103778597..103780870,2	K562	blood:
4	chr7:103773857..103776451-chr7:103778277..103781105,4	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10155973	0.81[AFR][1000 genomes]
rs1019312	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10234499	1.00[EUR][1000 genomes]
rs10235130	1.00[EUR][1000 genomes]
rs10235201	0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10241191	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10249033	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250235	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251308	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251561	1.00[EUR][1000 genomes]
rs10251976	0.84[AFR][1000 genomes]
rs10255806	0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256764	1.00[EUR][1000 genomes]
rs10258773	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10260238	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs10262560	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262796	0.82[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262996	0.81[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263828	1.00[EUR][1000 genomes]
rs10266337	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267412	0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267940	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268209	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270562	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271923	0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10275484	1.00[EUR][1000 genomes]
rs10275705	0.81[AFR][1000 genomes]
rs10276243	0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10278320	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10281709	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10282300	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10487184	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10487192	0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11489610	0.82[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11972422	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979390	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979993	0.82[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11980018	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12112576	1.00[EUR][1000 genomes]
rs16873387	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17158586	1.00[EUR][1000 genomes]
rs17159290	0.86[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17159774	1.00[EUR][1000 genomes]
rs2307409	1.00[EUR][1000 genomes]
rs2385134	0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28481813	1.00[EUR][1000 genomes]
rs28644319	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28645598	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28686914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28702500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28773535	1.00[EUR][1000 genomes]
rs28820003	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58842751	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59750244	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6948021	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6949887	0.86[YRI][hapmap];0.87[AFR][1000 genomes]
rs6954109	0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6962621	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6967711	1.00[EUR][1000 genomes]
rs6975642	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413894	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415704	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73415717	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73415730	1.00[EUR][1000 genomes]
rs73415786	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415801	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417705	1.00[EUR][1000 genomes]
rs73417718	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777446	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777906	0.82[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7810496	1.00[EUR][1000 genomes]
rs9655777	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9656090	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:103764000-103783200	Weak transcription	NHLF	lung
3	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
6	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
7	chr7:103766200-103800000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
9	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
10	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
11	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
12	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:103767200-103829200	Weak transcription	Gastric	stomach
14	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
15	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
16	chr7:103768000-103779800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
18	chr7:103769400-103779800	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr7:103771800-103800000	Weak transcription	HSMM	muscle
20	chr7:103771800-103804400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr7:103771800-103807200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr7:103771800-103820000	Weak transcription	NHEK	skin
23	chr7:103772200-103792000	Weak transcription	Aorta	Aorta
24	chr7:103773200-103822800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr7:103773400-103782600	Weak transcription	HUVEC	blood vessel
26	chr7:103773600-103781000	Weak transcription	HSMMtube	muscle
27	chr7:103774600-103781000	Weak transcription	HepG2	liver
28	chr7:103774600-103803600	Weak transcription	Ovary	ovary
29	chr7:103774800-103802800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr7:103775200-103829200	Weak transcription	Lung	lung
31	chr7:103775400-103803400	Weak transcription	Left Ventricle	heart
32	chr7:103775800-103803800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr7:103776800-103780000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr7:103776800-103781200	Weak transcription	A549	lung
35	chr7:103776800-103803800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:103776800-103820200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr7:103776800-103822800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr7:103777000-103779600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr7:103777000-103799800	Weak transcription	K562	blood
40	chr7:103777000-103803000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr7:103777000-103803800	Weak transcription	Brain Hippocampus Middle	brain
42	chr7:103777000-103804600	Weak transcription	Colonic Mucosa	Colon
43	chr7:103777000-103804800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr7:103777000-103805200	Weak transcription	Placenta	Placenta
45	chr7:103777000-103819600	Weak transcription	Fetal Brain Female	brain
46	chr7:103777200-103781000	Weak transcription	Primary B cells from cord blood	blood
47	chr7:103777200-103781600	Weak transcription	Dnd41	blood
48	chr7:103777200-103805000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr7:103777200-103819400	Weak transcription	GM12878-XiMat	blood
50	chr7:103777400-103779800	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links