Variant report

Variant	rs10242944
Chromosome Location	chr7:126648289-126648290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10225020	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11563302	0.86[GIH][hapmap]
rs11563409	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11563492	0.82[GIH][hapmap]
rs11563496	0.86[GIH][hapmap]
rs11563511	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11563720	0.82[MEX][hapmap]
rs11563735	1.00[CEU][hapmap]
rs11563777	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs11563780	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11563793	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17863182	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17863188	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17864102	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17864125	0.82[MEX][hapmap]
rs17867740	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17867741	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs7778604	0.90[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv608379	chr7:126643692-126657545	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10242944	GRM8	cis	multi-tissue	Pritchard
rs10242944	CADPS2	cis	cerebellum	SCAN
rs10242944	SLC13A1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links