Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122293297..122295809-chr7:122299127..122301217,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10228901	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10229791	1.00[AMR][1000 genomes]
rs10235266	0.87[YRI][hapmap]
rs10238335	1.00[AMR][1000 genomes]
rs10238929	1.00[AMR][1000 genomes]
rs10244187	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250037	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254479	1.00[AMR][1000 genomes]
rs10256337	0.87[YRI][hapmap]
rs10257455	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10257593	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10263672	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10267961	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10268190	1.00[YRI][hapmap]
rs10268368	0.87[YRI][hapmap]
rs10274143	1.00[AMR][1000 genomes]
rs10278021	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs13221540	1.00[YRI][hapmap]
rs13237142	1.00[YRI][hapmap]
rs13239569	1.00[YRI][hapmap]
rs28517374	1.00[AMR][1000 genomes]
rs4283984	1.00[YRI][hapmap]
rs6944720	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs6949494	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs6963572	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7779064	0.87[YRI][hapmap]
rs7789775	1.00[YRI][hapmap]
rs7792270	1.00[AMR][1000 genomes]
rs7798392	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7810196	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122292000-122293800	Enhancers	HUVEC	blood vessel
2	chr7:122292800-122293800	Enhancers	Stomach Mucosa	stomach
3	chr7:122293000-122293400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:122293000-122293400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr7:122293000-122293400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:122293000-122293400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:122293000-122293400	Enhancers	Esophagus	oesophagus
8	chr7:122293000-122293400	Enhancers	Gastric	stomach
9	chr7:122293000-122293400	Enhancers	Pancreas	Pancrea
10	chr7:122293000-122293600	Enhancers	Left Ventricle	heart
11	chr7:122293000-122293600	Enhancers	Lung	lung
12	chr7:122293000-122294000	Enhancers	Fetal Lung	lung

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