Variant report
Variant | rs1024418 |
---|---|
Chromosome Location | chr7:126363577-126363578 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | 7:126085913-126088095..7:126358358-126363704 | GM12878 | blood: | |
2 | chr7:126354910..126358134-chr7:126363262..126365444,3 | K562 | blood: | |
3 | 7:126358358-126363704..7:127009457-127018926 | GM12878 | blood: | |
4 | chr7:126354910..126357333-chr7:126363262..126365444,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000179603 | Chromatin interaction |
ENSG00000048405 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1008905 | 0.93[ASN][1000 genomes] |
rs10240139 | 0.88[YRI][hapmap];0.93[AFR][1000 genomes] |
rs1024417 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10279616 | 0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes] |
rs12667118 | 0.93[ASN][1000 genomes] |
rs13243112 | 0.88[ASN][1000 genomes] |
rs1579214 | 0.92[ASN][1000 genomes] |
rs1815973 | 0.92[ASN][1000 genomes] |
rs2237764 | 0.94[ASN][1000 genomes] |
rs2237765 | 0.93[ASN][1000 genomes] |
rs2283068 | 0.90[ASN][1000 genomes] |
rs2283069 | 0.93[ASN][1000 genomes] |
rs2299492 | 0.86[ASN][1000 genomes] |
rs2299497 | 1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2299498 | 1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs28693977 | 0.87[AFR][1000 genomes] |
rs2896374 | 0.96[ASN][1000 genomes] |
rs34261190 | 0.86[ASN][1000 genomes] |
rs35009695 | 0.98[ASN][1000 genomes] |
rs3808152 | 0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs3808153 | 0.94[ASN][1000 genomes] |
rs3824011 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs4728051 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4731321 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:126342000-126367800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |