Variant report

Variant	rs10244568
Chromosome Location	chr7:101492117-101492118
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101481976..101483682-chr7:101490428..101492243,2	MCF-7	breast:
2	chr7:101455526..101462599-chr7:101483700..101492237,14	K562	blood:
3	chr7:101456033..101460344-chr7:101486829..101492237,7	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10232848	0.92[AFR][1000 genomes]
rs10271358	0.92[AFR][1000 genomes]
rs10272452	0.92[AFR][1000 genomes]
rs6944983	0.87[AFR][1000 genomes]
rs6945158	0.89[AFR][1000 genomes]
rs73712556	0.82[AFR][1000 genomes]
rs73712575	0.92[AFR][1000 genomes]
rs9656070	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv521041	chr7:101458144-101496391	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101466800-101498400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:101470000-101496600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:101476200-101500000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:101488200-101492200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:101488800-101492200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:101489800-101492400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:101489800-101492600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:101490000-101498400	Weak transcription	Right Ventricle	heart
9	chr7:101490200-101498600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:101490600-101492200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:101490600-101492200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr7:101490800-101492200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr7:101490800-101492400	Enhancers	Dnd41	blood
14	chr7:101490800-101494600	Weak transcription	Thymus	Thymus
15	chr7:101490800-101496400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:101490800-101496400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr7:101490800-101496800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr7:101490800-101496800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr7:101490800-101497000	Weak transcription	Left Ventricle	heart
20	chr7:101490800-101497400	Weak transcription	Spleen	Spleen
21	chr7:101490800-101498400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:101490800-101498400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:101490800-101498400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr7:101490800-101498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:101490800-101499200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr7:101490800-101499400	Weak transcription	Fetal Lung	lung
27	chr7:101490800-101499400	Weak transcription	Hela-S3	cervix
28	chr7:101490800-101499400	Weak transcription	Osteobl	bone
29	chr7:101490800-101499600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:101490800-101499600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:101490800-101499600	Weak transcription	HSMMtube	muscle
32	chr7:101491000-101492200	Enhancers	Psoas Muscle	Psoas
33	chr7:101491000-101494800	Weak transcription	Fetal Stomach	stomach
34	chr7:101491000-101496400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:101491000-101496800	Weak transcription	K562	blood
36	chr7:101491000-101497000	Weak transcription	Fetal Muscle Leg	muscle
37	chr7:101491000-101499200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:101491000-101499400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:101491000-101499400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:101491000-101499400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:101491400-101492200	ZNF genes & repeats	GM12878-XiMat	blood
42	chr7:101491400-101492200	Enhancers	NHEK	skin
43	chr7:101491600-101492200	Enhancers	Aorta	Aorta
44	chr7:101491800-101493600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr7:101491800-101497000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr7:101491800-101497000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:101491800-101499400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr7:101491800-101499600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr7:101492000-101497000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:101492000-101497200	Weak transcription	Primary T cells from cord blood	blood

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