Variant report

Variant	rs10246196
Chromosome Location	chr7:138128870-138128871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138124409..138126032-chr7:138128520..138130262,2	K562	blood:
2	chr7:138126734..138129179-chr7:138153199..138155161,2	K562	blood:

Variant related genes	Relation type
ENSG00000214815	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10155993	0.84[JPT][hapmap]
rs10225876	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10246563	0.88[ASN][1000 genomes]
rs10250362	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12533792	0.91[JPT][hapmap]
rs12668679	0.95[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12668708	0.81[CEU][hapmap]
rs12669629	0.80[ASN][1000 genomes]
rs13229601	0.82[ASN][1000 genomes]
rs1673203	0.81[JPT][hapmap]
rs1673204	0.80[JPT][hapmap]
rs1673206	0.85[JPT][hapmap]
rs17169596	0.86[CEU][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17169597	0.95[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17364560	0.86[JPT][hapmap]
rs17461551	0.86[JPT][hapmap]
rs2029814	0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2029815	0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2353346	0.87[EUR][1000 genomes]
rs2353349	0.85[ASN][1000 genomes]
rs2353350	0.83[ASN][1000 genomes]
rs2353351	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2353354	0.84[JPT][hapmap]
rs2883142	0.88[EUR][1000 genomes]
rs28849519	0.85[ASN][1000 genomes]
rs34341136	0.85[ASN][1000 genomes]
rs3778705	0.85[JPT][hapmap]
rs3807157	0.85[JPT][hapmap]
rs4732317	0.95[CEU][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4732318	0.80[ASN][1000 genomes]
rs55875241	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55924435	0.91[EUR][1000 genomes]
rs56046212	0.85[ASN][1000 genomes]
rs56321501	0.85[ASN][1000 genomes]
rs60656053	0.85[ASN][1000 genomes]
rs60673935	0.83[ASN][1000 genomes]
rs62487579	0.84[ASN][1000 genomes]
rs62487580	0.84[ASN][1000 genomes]
rs62487581	0.84[ASN][1000 genomes]
rs62487582	0.84[ASN][1000 genomes]
rs62487583	0.85[ASN][1000 genomes]
rs62491077	0.87[EUR][1000 genomes]
rs62491079	0.87[EUR][1000 genomes]
rs62491082	0.84[EUR][1000 genomes]
rs6953166	0.85[ASN][1000 genomes]
rs6963539	0.86[JPT][hapmap]
rs6973057	0.91[JPT][hapmap]
rs73164615	0.83[ASN][1000 genomes]
rs749546	0.85[JPT][hapmap]
rs752158	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9791462	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv970583	chr7:138125511-138137818	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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