Variant report
| Variant | rs10248991 |
|---|---|
| Chromosome Location | chr7:138104620-138104621 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:138103425..138105780-chr7:138107506..138110043,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10248876 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10249020 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10249638 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2353345 | 0.86[ASN][1000 genomes] |
| rs2353346 | 0.82[ASN][1000 genomes] |
| rs2353347 | 0.86[ASN][1000 genomes] |
| rs2353348 | 0.83[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2883142 | 0.82[ASN][1000 genomes] |
| rs4361712 | 0.87[ASN][1000 genomes] |
| rs4367480 | 0.91[ASN][1000 genomes] |
| rs4574789 | 0.97[ASN][1000 genomes] |
| rs4620232 | 0.97[ASN][1000 genomes] |
| rs4626544 | 0.92[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4732314 | 0.87[AMR][1000 genomes] |
| rs62491079 | 0.81[ASN][1000 genomes] |
| rs6467769 | 0.97[ASN][1000 genomes] |
| rs6467771 | 0.86[ASN][1000 genomes] |
| rs6467772 | 0.90[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6947999 | 0.92[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6951998 | 0.86[ASN][1000 genomes] |
| rs6953860 | 0.97[ASN][1000 genomes] |
| rs6954343 | 0.82[ASN][1000 genomes] |
| rs6959223 | 0.91[ASN][1000 genomes] |
| rs6962241 | 0.97[ASN][1000 genomes] |
| rs6962854 | 0.92[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6964218 | 0.92[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6968570 | 0.97[ASN][1000 genomes] |
| rs6980108 | 0.96[ASN][1000 genomes] |
| rs7793703 | 0.90[AFR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34048 | chr7:137724092-138213119 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv831153 | chr7:138078179-138265648 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:138104200-138104800 | Enhancers | HepG2 | liver |
| 2 | chr7:138104400-138109400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
