Variant report

Variant	rs10249308
Chromosome Location	chr7:101398289-101398290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101389951..101392799-chr7:101396362..101398401,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73400077	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv1021797	chr7:101342353-101466957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv539046	chr7:101342353-101466957	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
8	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101397200-101398600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:101397400-101398400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
3	chr7:101397400-101398400	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr7:101397400-101398400	Flanking Active TSS	Dnd41	blood
5	chr7:101397400-101398600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:101397400-101398600	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr7:101397400-101398600	Active TSS	Stomach Smooth Muscle	stomach
8	chr7:101397400-101398600	Active TSS	A549	lung
9	chr7:101397400-101398600	Bivalent/Poised TSS	NHDF-Ad	bronchial
10	chr7:101397600-101398400	Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr7:101397600-101398400	Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr7:101397600-101398400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:101397600-101398400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
14	chr7:101397600-101398400	Active TSS	Aorta	Aorta
15	chr7:101397600-101398400	Bivalent/Poised TSS	Brain Substantia Nigra	brain
16	chr7:101397600-101398400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
17	chr7:101397600-101398400	Active TSS	Fetal Stomach	stomach
18	chr7:101397600-101398400	Active TSS	Left Ventricle	heart
19	chr7:101397600-101398400	Active TSS	Right Ventricle	heart
20	chr7:101397600-101398400	Flanking Active TSS	Hela-S3	cervix
21	chr7:101397600-101398400	Active TSS	HMEC	breast
22	chr7:101397600-101398600	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr7:101397600-101398600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:101397600-101398600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:101397600-101398600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:101397600-101398600	Active TSS	Colonic Mucosa	Colon
27	chr7:101397600-101398600	Active TSS	Colon Smooth Muscle	Colon
28	chr7:101397600-101398600	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr7:101397600-101398600	Active TSS	Fetal Lung	lung
30	chr7:101397600-101398600	Active TSS	Ovary	ovary
31	chr7:101397600-101398600	Active TSS	Rectal Smooth Muscle	rectum
32	chr7:101397600-101398600	Active TSS	Right Atrium	heart
33	chr7:101397600-101398600	Active TSS	NHLF	lung
34	chr7:101397800-101398400	Flanking Active TSS	Primary B cells from peripheral blood	blood
35	chr7:101397800-101398400	Bivalent/Poised TSS	Primary T cells fromperipheralblood	blood
36	chr7:101397800-101398400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr7:101397800-101398400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr7:101397800-101398400	Active TSS	Primary T killer memory cells from peripheral blood	blood
39	chr7:101397800-101398400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:101397800-101398400	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
41	chr7:101397800-101398400	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
42	chr7:101397800-101398400	Active TSS	Gastric	stomach
43	chr7:101397800-101398400	Flanking Bivalent TSS/Enh	NH-A	brain
44	chr7:101397800-101398400	Flanking Active TSS	Osteobl	bone
45	chr7:101397800-101398600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:101397800-101398600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:101397800-101398600	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr7:101397800-101398600	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
49	chr7:101397800-101398600	Flanking Active TSS	Fetal Brain Female	brain
50	chr7:101397800-101398600	Active TSS	HSMMtube	muscle

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