Variant report

Variant	rs10249855
Chromosome Location	chr7:147698173-147698174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10240221	0.92[YRI][hapmap]
rs12532284	1.00[CEU][hapmap]
rs12532290	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1541412	0.92[CEU][hapmap]
rs2214681	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2373289	0.83[CHB][hapmap]
rs2707554	1.00[YRI][hapmap]
rs2707582	0.91[CEU][hapmap]
rs4725757	0.92[YRI][hapmap]
rs4725758	0.96[CEU][hapmap];0.84[YRI][hapmap]
rs4726903	0.92[CEU][hapmap];0.84[YRI][hapmap]
rs4726912	0.86[YRI][hapmap]
rs6942912	0.92[CEU][hapmap]
rs6946207	1.00[CEU][hapmap]
rs6949561	0.86[YRI][hapmap]
rs6953539	0.92[CEU][hapmap]
rs6969904	0.92[CEU][hapmap];0.86[YRI][hapmap]
rs961519	0.91[YRI][hapmap]
rs9640247	0.82[YRI][hapmap]
rs977284	0.96[CEU][hapmap]
rs993715	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147696600-147698200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:147697000-147698200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:147697200-147698200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:147697800-147700200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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