Variant report

Variant	rs10251260
Chromosome Location	chr7:144993911-144993912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10241248	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs11770321	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772811	1.00[ASN][1000 genomes]
rs11773462	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12703672	1.00[ASN][1000 genomes]
rs13225537	1.00[ASN][1000 genomes]
rs13228818	1.00[ASN][1000 genomes]
rs13239688	1.00[ASN][1000 genomes]
rs13243922	1.00[ASN][1000 genomes]
rs1990078	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57341812	1.00[ASN][1000 genomes]
rs66706284	1.00[ASN][1000 genomes]
rs6976454	1.00[ASN][1000 genomes]
rs71528983	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031071	chr7:144318082-145125392	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv539169	chr7:144318082-145125392	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv831179	chr7:144830077-144998851	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1026420	chr7:144902627-145020612	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv971561	chr7:144969351-145014828	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:144991400-144998800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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