Variant report

Variant	rs1025184
Chromosome Location	chr15:52263265-52263266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52094295..52095871-chr15:52261900..52263731,2	MCF-7	breast:
2	chr15:52261233..52265470-chr15:52469433..52474401,7	MCF-7	breast:
3	chr15:52243665..52246508-chr15:52262168..52265352,3	MCF-7	breast:
4	chr15:52262145..52266701-chr15:52309209..52314377,19	MCF-7	breast:
5	chr15:52262628..52265811-chr15:52469801..52473537,4	MCF-7	breast:
6	chr15:52262398..52265193-chr15:52386264..52389426,3	MCF-7	breast:
7	chr15:52263208..52265625-chr15:52404085..52407650,4	MCF-7	breast:
8	chr15:52262536..52264088-chr15:52296110..52298428,2	MCF-7	breast:
9	chr15:52262270..52265607-chr15:52309730..52314612,10	K562	blood:
10	chr15:52244109..52249001-chr15:52262072..52265545,5	MCF-7	breast:
11	chr15:52262830..52265268-chr15:52372078..52374982,4	MCF-7	breast:
12	chr15:52073675..52076293-chr15:52262420..52265302,2	MCF-7	breast:
13	chr15:52258924..52260672-chr15:52262065..52263877,2	K562	blood:
14	chr15:52259207..52267788-chr15:52308373..52314434,24	MCF-7	breast:
15	chr15:52165419..52167687-chr15:52262244..52264140,2	MCF-7	breast:
16	chr15:52262650..52264778-chr15:52432288..52435005,3	MCF-7	breast:
17	chr15:52262263..52265564-chr15:52309489..52315686,9	K562	blood:
18	chr15:52262407..52265136-chr15:52430706..52432521,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction
ENSG00000137875	Chromatin interaction
ENSG00000069956	Chromatin interaction
ENSG00000259178	Chromatin interaction
ENSG00000069966	Chromatin interaction
ENSG00000259438	Chromatin interaction
ENSG00000242327	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000166477	Chromatin interaction
ENSG00000259577	Chromatin interaction

Extended variants
information (count: 279 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:274)

rs_ID	r²[population]
rs1035737	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs1035739	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10444823	0.90[CHB][hapmap]
rs10444824	0.83[EUR][1000 genomes]
rs10444825	0.82[EUR][1000 genomes]
rs10775145	0.91[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs10851503	0.91[EUR][1000 genomes]
rs10851504	0.88[EUR][1000 genomes]
rs11049	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11070868	0.83[EUR][1000 genomes]
rs11070869	0.83[EUR][1000 genomes]
rs1135871	0.84[EUR][1000 genomes]
rs11630253	0.96[EUR][1000 genomes]
rs11630579	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11630943	0.83[EUR][1000 genomes]
rs11631858	0.82[EUR][1000 genomes]
rs11636869	0.86[EUR][1000 genomes]
rs11637876	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs11638677	0.97[EUR][1000 genomes]
rs12050524	0.82[EUR][1000 genomes]
rs12438686	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs12591672	0.95[EUR][1000 genomes]
rs12593708	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12901638	0.88[EUR][1000 genomes]
rs12902346	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12903707	0.95[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs12904413	0.83[EUR][1000 genomes]
rs12904900	0.83[EUR][1000 genomes]
rs12905283	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs12908327	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs12912928	0.86[EUR][1000 genomes]
rs12913583	0.85[EUR][1000 genomes]
rs12913850	0.91[EUR][1000 genomes]
rs12915015	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12915568	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17526463	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs17526760	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs17539905	0.96[EUR][1000 genomes]
rs17610862	0.83[EUR][1000 genomes]
rs17611193	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs17612102	0.95[EUR][1000 genomes]
rs17612123	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17705732	0.91[CHB][hapmap];0.93[CHD][hapmap];0.81[ASN][1000 genomes]
rs1811326	0.88[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1863430	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1867984	0.95[CHB][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1895863	0.85[ASN][1000 genomes]
rs1972689	0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1991267	0.85[CEU][hapmap]
rs2006773	0.92[EUR][1000 genomes]
rs2007335	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2007355	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs2009972	0.89[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs2010026	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2011995	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2014638	0.86[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs2034856	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs2052705	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2052706	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2052708	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2052709	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2114191	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs2241503	0.94[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2251135	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2252606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2252831	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs2253116	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2258248	0.85[CEU][hapmap]
rs2264339	0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2303443	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2414119	0.81[ASN][1000 genomes]
rs2414122	0.84[CEU][hapmap];0.95[GIH][hapmap];0.97[EUR][1000 genomes]
rs2433217	1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs2433220	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2433221	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs2433222	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2436655	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2436656	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2436657	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2436658	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2436660	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs2436661	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2436662	0.92[EUR][1000 genomes]
rs2441780	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs2448946	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs2448947	0.95[EUR][1000 genomes]
rs2448948	0.96[EUR][1000 genomes]
rs2448949	0.92[EUR][1000 genomes]
rs2448950	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2448951	0.96[EUR][1000 genomes]
rs2448953	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2470590	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470591	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2470600	0.96[EUR][1000 genomes]
rs2470601	0.95[EUR][1000 genomes]
rs2470602	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470603	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470604	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2470605	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470607	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2470608	0.96[EUR][1000 genomes]
rs2470610	0.95[EUR][1000 genomes]
rs2470611	0.96[EUR][1000 genomes]
rs2470612	1.00[CEU][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs2470616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470617	0.94[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.81[LWK][hapmap];0.89[MKK][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap]
rs2470618	0.93[EUR][1000 genomes]
rs2470619	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2554305	0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2554306	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2554307	0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2554308	0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2554314	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2554315	0.86[CHB][hapmap];0.88[CHD][hapmap]
rs2554322	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2554327	1.00[CEU][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs2554328	0.92[EUR][1000 genomes]
rs2554334	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2554336	0.94[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2554337	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2554342	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554345	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2554348	0.92[CEU][hapmap]
rs2554349	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554350	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554353	0.92[EUR][1000 genomes]
rs2570224	0.88[ASW][hapmap];0.88[GIH][hapmap];0.91[TSI][hapmap]
rs2570228	0.89[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2570231	0.81[ASN][1000 genomes]
rs2570233	0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2570237	0.80[AMR][1000 genomes]
rs2570238	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2570239	0.81[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2570240	0.89[EUR][1000 genomes]
rs2570241	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs2570248	0.92[EUR][1000 genomes]
rs2570253	0.81[YRI][hapmap]
rs2570258	0.87[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2570260	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2570263	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2570268	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2570269	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2570271	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2570275	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2593168	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2593170	0.82[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2593173	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2593177	0.95[EUR][1000 genomes]
rs2593179	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2593181	0.85[CEU][hapmap]
rs2593182	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2593183	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2593185	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2593187	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2593188	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2593191	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2593194	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2593198	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2593199	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2593202	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2593204	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2623243	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2623244	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2623254	0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2623255	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2623259	0.88[YRI][hapmap]
rs2623262	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2623266	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2623271	1.00[CEU][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs2623279	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2623281	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2623282	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2623283	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2623284	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2623285	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2623286	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2623288	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2623289	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2912186	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2912187	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2912188	0.97[EUR][1000 genomes]
rs2912189	1.00[CEU][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs2912190	0.86[EUR][1000 genomes]
rs2916169	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2916170	0.91[EUR][1000 genomes]
rs2916171	0.91[EUR][1000 genomes]
rs2916172	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs2916175	0.93[EUR][1000 genomes]
rs2916176	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs2916177	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs2921951	0.94[EUR][1000 genomes]
rs2921953	0.94[EUR][1000 genomes]
rs2921957	0.89[EUR][1000 genomes]
rs2929422	0.97[EUR][1000 genomes]
rs2929423	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2929424	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2929425	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs2929426	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs2929428	0.96[EUR][1000 genomes]
rs2959285	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs2959289	0.93[EUR][1000 genomes]
rs2959291	0.97[EUR][1000 genomes]
rs2959292	0.97[EUR][1000 genomes]
rs2959293	0.96[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes]
rs2959296	0.84[CEU][hapmap]
rs2959298	1.00[CEU][hapmap];0.88[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs2959299	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs2959300	0.94[EUR][1000 genomes]
rs2959302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2959304	0.88[EUR][1000 genomes]
rs2959305	0.93[EUR][1000 genomes]
rs2959306	0.95[EUR][1000 genomes]
rs2959307	0.94[EUR][1000 genomes]
rs3110551	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3110553	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34504520	0.83[EUR][1000 genomes]
rs34842090	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35270232	0.85[EUR][1000 genomes]
rs35823585	0.85[EUR][1000 genomes]
rs36087956	0.95[EUR][1000 genomes]
rs3751596	0.91[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs3794532	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs3794534	0.91[CHB][hapmap]
rs3794535	0.95[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs3794536	0.81[ASN][1000 genomes]
rs4774602	0.91[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs4775978	0.95[CHB][hapmap]
rs4775982	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs4775983	0.95[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs56148956	0.83[EUR][1000 genomes]
rs56185947	0.83[EUR][1000 genomes]
rs58758283	0.81[ASN][1000 genomes]
rs59808035	0.86[ASN][1000 genomes]
rs60329909	0.80[ASN][1000 genomes]
rs62015190	0.96[EUR][1000 genomes]
rs62016192	0.95[EUR][1000 genomes]
rs6493520	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs6493521	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6493522	0.80[ASN][1000 genomes]
rs6493523	0.95[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs6493525	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs6493526	1.00[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs690638	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs7162554	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7162925	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7163541	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7164961	0.83[EUR][1000 genomes]
rs7165283	0.91[CHB][hapmap]
rs7170091	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7170910	0.88[EUR][1000 genomes]
rs7171459	0.81[ASN][1000 genomes]
rs7171516	0.83[EUR][1000 genomes]
rs7171796	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7176421	0.85[ASN][1000 genomes]
rs7178561	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7178776	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7178940	0.84[EUR][1000 genomes]
rs7179599	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs726158	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs72732914	0.93[EUR][1000 genomes]
rs72732952	0.87[ASN][1000 genomes]
rs8024585	0.86[EUR][1000 genomes]
rs8026521	0.86[EUR][1000 genomes]
rs8028486	0.85[EUR][1000 genomes]
rs8028922	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs8029036	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8033433	0.87[EUR][1000 genomes]
rs8035126	0.88[EUR][1000 genomes]
rs8038344	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs8040991	0.92[EUR][1000 genomes]
rs8041268	0.81[ASN][1000 genomes]
rs919059	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs990665	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9944235	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1053788	chr15:52223389-52307138	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1047260	chr15:52257100-52337418	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
5	nsv569410	chr15:52257874-52273132	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1025184	SCG3	cis	Cerebellum	GTEx
rs1025184	SCG3	cis	Frontal Cortex	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52261800-52263400	Enhancers	Small Intestine	intestine
2	chr15:52262000-52263400	Flanking Active TSS	Hela-S3	cervix
3	chr15:52262200-52263400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:52262200-52263400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr15:52262200-52263600	Flanking Active TSS	NHLF	lung
6	chr15:52262200-52263800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:52262200-52264600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:52262200-52264800	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr15:52262200-52265000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:52262400-52263400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:52262400-52263400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr15:52262400-52263400	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr15:52262400-52263400	Enhancers	Spleen	Spleen
14	chr15:52262400-52264600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:52262400-52264600	Active TSS	Colonic Mucosa	Colon
16	chr15:52262400-52264800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:52262400-52265000	Active TSS	HSMM	muscle
18	chr15:52262600-52263400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr15:52262600-52263400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
20	chr15:52262600-52263600	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr15:52262600-52264600	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr15:52262600-52264600	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr15:52262600-52264600	Active TSS	GM12878-XiMat	blood
24	chr15:52262600-52264800	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr15:52262600-52264800	Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr15:52262600-52264800	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr15:52262600-52264800	Active TSS	HMEC	breast
28	chr15:52262600-52264800	Active TSS	K562	blood
29	chr15:52262800-52263400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:52262800-52263400	Flanking Active TSS	Brain Angular Gyrus	brain
31	chr15:52262800-52263400	Flanking Active TSS	Brain Anterior Caudate	brain
32	chr15:52262800-52263400	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr15:52262800-52263400	Flanking Active TSS	Fetal Brain Female	brain
34	chr15:52262800-52263400	Flanking Active TSS	Fetal Lung	lung
35	chr15:52262800-52263400	Flanking Active TSS	Fetal Thymus	thymus
36	chr15:52262800-52263400	Flanking Active TSS	Thymus	Thymus
37	chr15:52262800-52263400	Flanking Active TSS	HUVEC	blood vessel
38	chr15:52262800-52263400	Flanking Active TSS	NH-A	brain
39	chr15:52262800-52263400	Flanking Active TSS	Osteobl	bone
40	chr15:52262800-52263600	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chr15:52262800-52263600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr15:52262800-52263600	Flanking Active TSS	Duodenum Mucosa	Duodenum
43	chr15:52262800-52263600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr15:52262800-52263800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
45	chr15:52262800-52264000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr15:52262800-52264600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr15:52262800-52264600	Active TSS	H9 Cell Line	embryonic stem cell
48	chr15:52262800-52264600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:52262800-52264800	Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr15:52262800-52264800	Active TSS	H1 Cell Line	embryonic stem cell

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Variant report

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