Variant report

Variant	rs1025185
Chromosome Location	chr15:52263492-52263493
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52094295..52095871-chr15:52261900..52263731,2	MCF-7	breast:
2	chr15:52261233..52265470-chr15:52469433..52474401,7	MCF-7	breast:
3	chr15:52243665..52246508-chr15:52262168..52265352,3	MCF-7	breast:
4	chr15:52262145..52266701-chr15:52309209..52314377,19	MCF-7	breast:
5	chr15:52263277..52265007-chr15:52427883..52430038,2	MCF-7	breast:
6	chr15:52262628..52265811-chr15:52469801..52473537,4	MCF-7	breast:
7	chr15:52262398..52265193-chr15:52386264..52389426,3	MCF-7	breast:
8	chr15:52263208..52265625-chr15:52404085..52407650,4	MCF-7	breast:
9	chr15:52262536..52264088-chr15:52296110..52298428,2	MCF-7	breast:
10	chr15:52262270..52265607-chr15:52309730..52314612,10	K562	blood:
11	chr15:52244109..52249001-chr15:52262072..52265545,5	MCF-7	breast:
12	chr15:52262830..52265268-chr15:52372078..52374982,4	MCF-7	breast:
13	chr15:52073675..52076293-chr15:52262420..52265302,2	MCF-7	breast:
14	chr15:52258924..52260672-chr15:52262065..52263877,2	K562	blood:
15	chr15:52259207..52267788-chr15:52308373..52314434,24	MCF-7	breast:
16	chr15:52165419..52167687-chr15:52262244..52264140,2	MCF-7	breast:
17	chr15:52262650..52264778-chr15:52432288..52435005,3	MCF-7	breast:
18	chr15:52262263..52265564-chr15:52309489..52315686,9	K562	blood:
19	chr15:52262407..52265136-chr15:52430706..52432521,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128872	Chromatin interaction
ENSG00000069956	Chromatin interaction
ENSG00000166477	Chromatin interaction
ENSG00000259577	Chromatin interaction
ENSG00000137875	Chromatin interaction
ENSG00000138594	Chromatin interaction
ENSG00000069966	Chromatin interaction
ENSG00000242327	Chromatin interaction
ENSG00000259178	Chromatin interaction
ENSG00000259438	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10519323	1.00[EUR][1000 genomes]
rs10519325	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10519326	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12438469	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1426085	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1426086	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17649047	1.00[EUR][1000 genomes]
rs17649178	1.00[EUR][1000 genomes]
rs17649255	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17649391	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17649692	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17649801	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17649820	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs17649826	0.97[AMR][1000 genomes]
rs17705530	1.00[EUR][1000 genomes]
rs17705649	1.00[EUR][1000 genomes]
rs17705685	1.00[EUR][1000 genomes]
rs17705889	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17706076	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2052707	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2162224	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2250797	0.84[AMR][1000 genomes]
rs2263946	0.81[ASN][1000 genomes]
rs2436664	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2470609	0.85[ASN][1000 genomes]
rs2470613	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2554309	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2554310	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2554311	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2554317	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2554318	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2554321	0.86[ASN][1000 genomes]
rs2554323	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2554325	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2554326	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2554330	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2554333	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2554341	0.83[ASN][1000 genomes]
rs2554351	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2554352	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2554356	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2570218	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2570219	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2570220	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2570221	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2570225	0.87[ASN][1000 genomes]
rs2570227	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2570234	0.85[ASN][1000 genomes]
rs2570242	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2570244	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2570245	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2570247	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2570249	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2570250	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2570256	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2570257	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2570259	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2570261	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2570267	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2570270	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2570273	1.00[EUR][1000 genomes]
rs2570274	1.00[EUR][1000 genomes]
rs2593165	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2593175	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2593176	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2593180	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2593196	0.84[AMR][1000 genomes]
rs2623246	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2623248	0.87[ASN][1000 genomes]
rs2623250	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2623252	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2623253	0.85[ASN][1000 genomes]
rs2623257	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2623260	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2623264	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2623267	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2623268	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2623269	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2623277	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2623278	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2623287	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2623293	0.86[ASN][1000 genomes]
rs2899483	1.00[EUR][1000 genomes]
rs2916174	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2959297	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959303	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3099570	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34407523	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35487339	0.84[AMR][1000 genomes]
rs3794533	1.00[EUR][1000 genomes]
rs3794537	1.00[EUR][1000 genomes]
rs4774601	1.00[EUR][1000 genomes]
rs4775979	1.00[EUR][1000 genomes]
rs4775987	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4775988	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4775989	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4775990	0.91[AMR][1000 genomes]
rs7166322	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170429	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170700	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7179139	1.00[EUR][1000 genomes]
rs73411105	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74013606	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8024441	1.00[EUR][1000 genomes]
rs8026507	1.00[EUR][1000 genomes]
rs8027426	1.00[EUR][1000 genomes]
rs8042310	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs919056	0.85[ASN][1000 genomes]
rs919057	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs990666	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1053788	chr15:52223389-52307138	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1047260	chr15:52257100-52337418	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
5	nsv569410	chr15:52257874-52273132	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52262200-52263600	Flanking Active TSS	NHLF	lung
2	chr15:52262200-52263800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:52262200-52264600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:52262200-52264800	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr15:52262200-52265000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:52262400-52264600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:52262400-52264600	Active TSS	Colonic Mucosa	Colon
8	chr15:52262400-52264800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:52262400-52265000	Active TSS	HSMM	muscle
10	chr15:52262600-52263600	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr15:52262600-52264600	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr15:52262600-52264600	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr15:52262600-52264600	Active TSS	GM12878-XiMat	blood
14	chr15:52262600-52264800	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr15:52262600-52264800	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr15:52262600-52264800	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr15:52262600-52264800	Active TSS	HMEC	breast
18	chr15:52262600-52264800	Active TSS	K562	blood
19	chr15:52262800-52263600	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr15:52262800-52263600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr15:52262800-52263600	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr15:52262800-52263600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr15:52262800-52263800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr15:52262800-52264000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr15:52262800-52264600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:52262800-52264600	Active TSS	H9 Cell Line	embryonic stem cell
27	chr15:52262800-52264600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:52262800-52264800	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr15:52262800-52264800	Active TSS	H1 Cell Line	embryonic stem cell
30	chr15:52262800-52264800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:52262800-52264800	Active TSS	HSMMtube	muscle
32	chr15:52263000-52263600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:52263000-52263600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr15:52263000-52263600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr15:52263000-52263600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:52263000-52263600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr15:52263000-52263600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr15:52263000-52263600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:52263000-52263600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:52263000-52263600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:52263000-52263600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr15:52263000-52263800	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr15:52263000-52263800	Flanking Active TSS	Liver	Liver
44	chr15:52263000-52264400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
45	chr15:52263000-52264600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:52263000-52264600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr15:52263000-52264600	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr15:52263000-52264600	Active TSS	Psoas Muscle	Psoas
49	chr15:52263000-52264600	Active TSS	Right Ventricle	heart
50	chr15:52263000-52264600	Active TSS	NHDF-Ad	bronchial

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