Variant report

Variant	rs10252576
Chromosome Location	chr7:104497123-104497124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10085831	0.83[ASN][1000 genomes]
rs10226913	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10226989	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10267013	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10953453	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs12055895	0.89[EUR][1000 genomes]
rs12672828	0.89[EUR][1000 genomes]
rs17706774	0.88[EUR][1000 genomes]
rs2005888	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2192931	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs2385466	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs2891785	0.81[JPT][hapmap]
rs3955473	0.82[EUR][1000 genomes]
rs4382394	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs4571661	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4730052	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs4730053	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs59264482	0.81[EUR][1000 genomes]
rs59814386	0.87[EUR][1000 genomes]
rs62485395	0.87[EUR][1000 genomes]
rs62485396	0.82[EUR][1000 genomes]
rs6466028	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs6944796	0.80[ASN][1000 genomes]
rs6958846	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs741323	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9885984	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104476400-104503000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
3	chr7:104493400-104500800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:104493600-104497400	Weak transcription	GM12878-XiMat	blood
5	chr7:104493800-104498400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:104494000-104502800	Weak transcription	Fetal Intestine Large	intestine
7	chr7:104496800-104500800	Strong transcription	Fetal Intestine Small	intestine

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