Variant report

Variant	rs10252668
Chromosome Location	chr7:137213552-137213553
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137205678..137207528-chr7:137211827..137214394,2	K562	blood:
2	chr7:137211431..137214341-chr7:137214552..137216820,2	MCF-7	breast:

Extended variants
information (count: 188 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:184)

rs_ID	r²[population]
rs10081252	0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10226970	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229086	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232182	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10233537	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234462	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237704	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238276	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238305	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs10242081	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10242488	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10242747	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245413	1.00[ASW][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10246490	0.89[EUR][1000 genomes]
rs10246829	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246952	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255388	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255937	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10260210	1.00[EUR][1000 genomes]
rs10260958	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261618	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264172	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264413	0.86[ASW][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267688	0.94[ASN][1000 genomes]
rs10268521	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271043	1.00[ASW][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10273321	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274366	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10274702	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10277872	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279489	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10280229	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10281244	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358445	1.00[EUR][1000 genomes]
rs1358446	1.00[EUR][1000 genomes]
rs1358447	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1364367	0.89[EUR][1000 genomes]
rs1525043	0.89[EUR][1000 genomes]
rs1525044	0.89[EUR][1000 genomes]
rs1525046	0.89[EUR][1000 genomes]
rs1525047	0.89[EUR][1000 genomes]
rs1525049	0.95[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs1614024	0.89[EUR][1000 genomes]
rs1615692	0.89[EUR][1000 genomes]
rs1629172	0.89[EUR][1000 genomes]
rs1646364	0.89[EUR][1000 genomes]
rs1646371	0.89[EUR][1000 genomes]
rs1646372	1.00[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs1646373	0.89[EUR][1000 genomes]
rs1646375	1.00[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs1646376	0.89[EUR][1000 genomes]
rs1646377	0.89[EUR][1000 genomes]
rs1646378	0.89[EUR][1000 genomes]
rs1646380	0.89[EUR][1000 genomes]
rs1646381	0.89[EUR][1000 genomes]
rs1646382	0.89[EUR][1000 genomes]
rs1646383	0.89[EUR][1000 genomes]
rs1646384	0.89[EUR][1000 genomes]
rs1646385	0.89[EUR][1000 genomes]
rs1646386	0.89[EUR][1000 genomes]
rs1646387	0.89[EUR][1000 genomes]
rs1646388	0.89[EUR][1000 genomes]
rs1646389	0.94[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs1646390	0.89[EUR][1000 genomes]
rs1646393	0.89[EUR][1000 genomes]
rs1646395	0.89[EUR][1000 genomes]
rs1646397	0.89[EUR][1000 genomes]
rs1646400	0.89[EUR][1000 genomes]
rs1646401	0.89[EUR][1000 genomes]
rs17169237	0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17169262	0.89[EUR][1000 genomes]
rs17169284	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17169298	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17169313	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs17169324	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1723086	0.89[EUR][1000 genomes]
rs1723088	0.89[EUR][1000 genomes]
rs1723089	0.89[EUR][1000 genomes]
rs1723090	0.89[EUR][1000 genomes]
rs1723091	0.89[EUR][1000 genomes]
rs1723094	0.89[EUR][1000 genomes]
rs1723095	0.89[EUR][1000 genomes]
rs1723096	0.89[EUR][1000 genomes]
rs1723101	0.89[EUR][1000 genomes]
rs1723102	0.89[EUR][1000 genomes]
rs1723103	0.89[EUR][1000 genomes]
rs1723104	0.89[EUR][1000 genomes]
rs1723106	0.89[EUR][1000 genomes]
rs1723107	0.89[EUR][1000 genomes]
rs1723109	0.89[EUR][1000 genomes]
rs1723119	0.89[EUR][1000 genomes]
rs1723120	0.89[EUR][1000 genomes]
rs1723122	0.89[EUR][1000 genomes]
rs1723123	0.89[EUR][1000 genomes]
rs1728441	0.89[EUR][1000 genomes]
rs1728442	0.89[EUR][1000 genomes]
rs1728443	1.00[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs1728450	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1728453	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1728476	1.00[EUR][1000 genomes]
rs1728491	0.89[EUR][1000 genomes]
rs1728493	0.89[EUR][1000 genomes]
rs1728495	0.89[EUR][1000 genomes]
rs1728496	0.89[EUR][1000 genomes]
rs1728497	0.89[EUR][1000 genomes]
rs1728498	0.94[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs2293547	1.00[EUR][1000 genomes]
rs2293548	1.00[EUR][1000 genomes]
rs2550979	0.89[EUR][1000 genomes]
rs2550981	0.89[EUR][1000 genomes]
rs2692001	0.89[EUR][1000 genomes]
rs2692002	0.89[EUR][1000 genomes]
rs2692003	0.89[EUR][1000 genomes]
rs2692006	0.89[EUR][1000 genomes]
rs2692007	0.89[EUR][1000 genomes]
rs2692008	0.94[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs28401380	1.00[EUR][1000 genomes]
rs28451058	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28521198	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28572056	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28683654	0.85[AMR][1000 genomes]
rs28711988	1.00[EUR][1000 genomes]
rs28736349	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28755996	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28758372	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800605	1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3800609	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs3800610	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3800611	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs3823545	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823547	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57226761	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58048755	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59024585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945473	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946246	1.00[EUR][1000 genomes]
rs6949210	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6949568	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6963894	1.00[EUR][1000 genomes]
rs6964439	1.00[EUR][1000 genomes]
rs6964837	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6969227	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6969358	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs697596	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs706560	1.00[JPT][hapmap]
rs706561	0.83[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs706562	1.00[JPT][hapmap]
rs706567	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs706568	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs73449424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449434	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73449444	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73451467	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73453511	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73453514	0.89[EUR][1000 genomes]
rs73453584	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73453598	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73728732	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7781327	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs7800321	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs834051	0.89[EUR][1000 genomes]
rs834052	0.89[EUR][1000 genomes]
rs834054	1.00[GIH][hapmap];0.89[EUR][1000 genomes]
rs834055	0.89[EUR][1000 genomes]
rs834056	0.89[EUR][1000 genomes]
rs834057	0.89[EUR][1000 genomes]
rs834058	0.89[EUR][1000 genomes]
rs834069	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs834077	0.89[EUR][1000 genomes]
rs834078	0.89[EUR][1000 genomes]
rs834086	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs834095	0.89[EUR][1000 genomes]
rs834099	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs834100	0.83[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs834438	0.82[ASN][1000 genomes]
rs834439	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs834443	1.00[ASN][1000 genomes]
rs834444	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs834446	1.00[ASN][1000 genomes]
rs834447	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs863082	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs865021	0.89[EUR][1000 genomes]
rs883222	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137205200-137222400	Weak transcription	HSMMtube	muscle
2	chr7:137206600-137222200	Weak transcription	Osteobl	bone
3	chr7:137206600-137222400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:137206800-137214400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:137206800-137218600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:137206800-137222400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:137207200-137232600	Weak transcription	Aorta	Aorta
8	chr7:137213400-137213800	Enhancers	HUES48 Cell Line	embryonic stem cell

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