Variant report

Variant	rs10253770
Chromosome Location	chr7:126237059-126237060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10246061	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10274867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10487452	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs11763805	0.96[EUR][1000 genomes]
rs11764888	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs11765247	0.88[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap]
rs11767915	0.88[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap]
rs11767976	0.87[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap]
rs11769015	0.97[EUR][1000 genomes]
rs11770188	1.00[CEU][hapmap];0.83[CHB][hapmap];0.97[EUR][1000 genomes]
rs11773107	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs1361982	0.94[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap]
rs17149953	1.00[CEU][hapmap];0.83[CHB][hapmap];0.97[EUR][1000 genomes]
rs17149975	0.97[EUR][1000 genomes]
rs17149978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17150011	1.00[CEU][hapmap];0.83[CHB][hapmap];0.97[EUR][1000 genomes]
rs17150014	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs17610771	0.94[CEU][hapmap];0.83[CHB][hapmap];0.88[EUR][1000 genomes]
rs17612316	0.87[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap]
rs2157821	0.87[CEU][hapmap];0.92[CHB][hapmap]
rs2237744	0.97[EUR][1000 genomes]
rs41463444	1.00[CEU][hapmap];0.83[CHB][hapmap];0.97[EUR][1000 genomes]
rs56142844	0.97[EUR][1000 genomes]
rs56256561	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57391111	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58699988	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60714151	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62477862	0.92[EUR][1000 genomes]
rs62477869	0.97[EUR][1000 genomes]
rs62479322	0.94[EUR][1000 genomes]
rs73224961	0.97[EUR][1000 genomes]
rs73224962	0.97[EUR][1000 genomes]
rs73224963	0.97[EUR][1000 genomes]
rs734524	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7805288	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs7805959	0.83[CEU][hapmap];0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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