Variant report

Variant	rs10255235
Chromosome Location	chr7:39376268-39376269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10256992	0.85[ASN][1000 genomes]
rs10258232	0.87[ASN][1000 genomes]
rs10265404	0.85[ASN][1000 genomes]
rs11514785	0.85[ASN][1000 genomes]
rs2073538	0.84[ASN][1000 genomes]
rs2074936	0.84[ASN][1000 genomes]
rs2237413	0.85[ASN][1000 genomes]
rs2237414	0.86[ASN][1000 genomes]
rs2299138	0.85[ASN][1000 genomes]
rs3800853	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39372000-39379200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:39374600-39383000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:39376000-39376400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:39376000-39376600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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