Variant report

Variant	rs10256067
Chromosome Location	chr7:126182937-126182938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:126181175..126183818-chr7:126200228..126202608,2	K562	blood:
2	7:126177569-126189146..7:127225864-127233104	GM12878	blood:
3	7:126177569-126189146..7:127221502-127225864	Hela-S3	cervix:
4	7:126177569-126189146..7:127233104-127239235	K562	blood:
5	7:126177569-126189146..7:126756671-126761022	K562	blood:
6	7:126177569-126189146..7:127070190-127076279	Hela-S3	cervix:
7	7:126177569-126189146..7:126890676-126899918	K562	blood:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction
ENSG00000048405	Chromatin interaction
ENSG00000106328	Chromatin interaction
ENSG00000004059	Chromatin interaction
ENSG00000179562	Chromatin interaction

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10244055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10487454	0.80[JPT][hapmap]
rs10487455	0.80[JPT][hapmap]
rs10487456	0.80[JPT][hapmap]
rs10808224	0.80[JPT][hapmap]
rs10954120	0.80[JPT][hapmap]
rs10954131	0.80[JPT][hapmap]
rs11486997	0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs11971474	0.80[JPT][hapmap]
rs12533174	0.80[JPT][hapmap]
rs12533463	0.81[CEU][hapmap];0.80[JPT][hapmap]
rs12536122	0.80[JPT][hapmap]
rs12537689	0.80[JPT][hapmap]
rs12538680	0.80[JPT][hapmap]
rs12538710	0.80[JPT][hapmap]
rs12538744	0.84[JPT][hapmap]
rs12540159	0.80[JPT][hapmap]
rs12666621	0.90[CEU][hapmap]
rs1361989	0.80[JPT][hapmap]
rs1419476	0.80[JPT][hapmap]
rs1419481	0.80[JPT][hapmap]
rs1419486	0.80[JPT][hapmap]
rs1419487	0.80[JPT][hapmap]
rs1419488	0.80[JPT][hapmap]
rs1419489	0.80[JPT][hapmap]
rs1419495	0.80[JPT][hapmap]
rs1468098	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1468155	0.89[CEU][hapmap]
rs1468156	0.80[JPT][hapmap]
rs17607415	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17609121	0.80[JPT][hapmap]
rs17610345	0.80[JPT][hapmap]
rs17610889	0.80[JPT][hapmap]
rs17612358	0.85[JPT][hapmap]
rs17680718	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[ASN][1000 genomes]
rs17682143	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17682178	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17682376	0.80[JPT][hapmap];0.81[EUR][1000 genomes]
rs17683130	0.80[JPT][hapmap]
rs17683331	0.80[JPT][hapmap]
rs17683777	0.80[JPT][hapmap]
rs17684332	0.80[JPT][hapmap]
rs17690706	0.80[JPT][hapmap]
rs1815971	0.80[JPT][hapmap]
rs1894733	0.80[JPT][hapmap]
rs2027989	0.80[JPT][hapmap]
rs2041167	0.95[CEU][hapmap]
rs2073862	0.80[JPT][hapmap]
rs2106309	0.80[JPT][hapmap]
rs2106310	0.81[CEU][hapmap];0.80[JPT][hapmap]
rs2106313	0.80[JPT][hapmap]
rs2106314	0.80[JPT][hapmap]
rs2237733	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2237735	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2237736	0.95[CEU][hapmap]
rs2237737	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2237739	0.92[ASN][1000 genomes]
rs2237741	0.92[ASN][1000 genomes]
rs2237742	0.92[ASN][1000 genomes]
rs2237745	0.80[JPT][hapmap]
rs2237747	0.80[JPT][hapmap]
rs2237750	0.80[JPT][hapmap]
rs2237751	0.80[JPT][hapmap]
rs2283064	1.00[JPT][hapmap]
rs2283065	0.95[CEU][hapmap]
rs2283066	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2283067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2299446	0.95[CEU][hapmap];0.88[ASN][1000 genomes]
rs2299449	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2299452	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2299457	0.92[ASN][1000 genomes]
rs2299458	0.92[ASN][1000 genomes]
rs2299465	0.80[JPT][hapmap]
rs2299467	0.80[JPT][hapmap]
rs2299468	0.80[JPT][hapmap]
rs2299475	0.80[JPT][hapmap]
rs2299477	0.80[JPT][hapmap]
rs2299479	0.80[JPT][hapmap]
rs2299484	0.80[JPT][hapmap]
rs2299486	0.80[JPT][hapmap]
rs2299487	0.80[JPT][hapmap]
rs2299488	0.85[JPT][hapmap]
rs2839994	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3802001	0.80[JPT][hapmap]
rs3808156	0.80[JPT][hapmap]
rs3808157	0.80[JPT][hapmap]
rs3808161	0.80[JPT][hapmap]
rs3824018	0.80[JPT][hapmap]
rs4236623	0.80[JPT][hapmap]
rs56065814	0.92[ASN][1000 genomes]
rs62479315	0.81[EUR][1000 genomes]
rs6467085	0.92[ASN][1000 genomes]
rs6949287	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6956988	1.00[JPT][hapmap]
rs6980438	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs728226	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs728601	0.80[JPT][hapmap]
rs728602	0.80[JPT][hapmap]
rs7455156	0.80[JPT][hapmap]
rs766239	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[ASN][1000 genomes]
rs766240	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7776779	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7786175	1.00[JPT][hapmap]
rs7790017	0.80[JPT][hapmap]
rs7792700	0.80[JPT][hapmap]
rs916615	0.87[ASN][1000 genomes]
rs917405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9641799	0.80[JPT][hapmap]
rs9641800	0.81[CEU][hapmap]
rs975266	0.80[JPT][hapmap]
rs9942592	0.81[EUR][1000 genomes]
rs9942596	0.80[JPT][hapmap]
rs9942680	0.80[EUR][1000 genomes]
rs9942681	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1023465	chr7:125873329-126191422	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1028204	chr7:125897362-126225444	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv539118	chr7:125897362-126225444	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv521803	chr7:126149319-126219766	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126176000-126188000	Weak transcription	Left Ventricle	heart

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