Variant report

Variant	rs10256992
Chromosome Location	chr7:39431315-39431316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10248165	0.83[GIH][hapmap]
rs10255235	0.85[ASN][1000 genomes]
rs10258232	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs10282049	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs11981229	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs12666115	0.91[CHB][hapmap]
rs12672997	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs17701573	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs1990243	0.87[GIH][hapmap]
rs2237410	0.82[CHB][hapmap];0.82[CHD][hapmap];0.85[ASN][1000 genomes]
rs2237413	0.87[CHD][hapmap]
rs2299136	0.82[CHB][hapmap];0.85[CHD][hapmap];0.83[ASN][1000 genomes]
rs2299138	0.90[CHD][hapmap]
rs3800853	0.81[JPT][hapmap]
rs55751785	0.87[ASN][1000 genomes]
rs58695218	0.89[ASN][1000 genomes]
rs60586729	0.81[AFR][1000 genomes]
rs6979897	0.87[ASN][1000 genomes]
rs7801145	0.91[CHB][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv981456	chr7:39431071-39454006	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39426000-39432800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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