Variant report
| Variant | rs10257455 |
|---|---|
| Chromosome Location | chr7:122284445-122284446 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10228901 | 0.88[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs10229791 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10235266 | 0.88[YRI][hapmap] |
| rs10238335 | 1.00[AMR][1000 genomes] |
| rs10238929 | 1.00[AMR][1000 genomes] |
| rs10243551 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10244187 | 1.00[AMR][1000 genomes] |
| rs10248746 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10250037 | 1.00[AMR][1000 genomes] |
| rs10254479 | 1.00[AMR][1000 genomes] |
| rs10256337 | 0.88[YRI][hapmap] |
| rs10257593 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs10263672 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs10267961 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs10268190 | 1.00[YRI][hapmap] |
| rs10268368 | 0.87[YRI][hapmap] |
| rs10274143 | 1.00[AMR][1000 genomes] |
| rs10278021 | 0.88[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs13221540 | 1.00[YRI][hapmap] |
| rs13237142 | 1.00[YRI][hapmap] |
| rs13239569 | 1.00[YRI][hapmap] |
| rs28517374 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4283984 | 1.00[YRI][hapmap] |
| rs6944720 | 0.88[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs6949494 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs6963572 | 0.88[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7779064 | 0.88[YRI][hapmap] |
| rs7789775 | 1.00[YRI][hapmap] |
| rs7792270 | 1.00[AMR][1000 genomes] |
| rs7798392 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7810196 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017029 | chr7:121958574-122338623 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv532178 | chr7:122203056-122978846 | Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv532179 | chr7:122249639-122986259 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | esv3346852 | chr7:122284241-122287089 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:122269800-122288000 | Weak transcription | HepG2 | liver |
| 2 | chr7:122278600-122288200 | Weak transcription | Gastric | stomach |
