Variant report

Variant	rs10258706
Chromosome Location	chr7:138162061-138162062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138064132..138065748-chr7:138161608..138163867,2	K562	blood:
2	chr7:138160365..138163276-chr7:138166698..138169786,4	K562	blood:
3	chr7:138144053..138146716-chr7:138160632..138162492,2	MCF-7	breast:
4	chr7:138160631..138163276-chr7:138165542..138169599,3	K562	blood:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction
ENSG00000239123	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10155993	0.90[ASN][1000 genomes]
rs10215281	0.90[ASN][1000 genomes]
rs10232771	0.86[ASN][1000 genomes]
rs1030961	0.85[ASN][1000 genomes]
rs1077772	0.92[ASN][1000 genomes]
rs11976614	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12112459	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12666310	0.82[ASN][1000 genomes]
rs1421604	0.90[ASN][1000 genomes]
rs1544733	0.81[ASN][1000 genomes]
rs1673203	0.81[ASN][1000 genomes]
rs1673204	0.81[ASN][1000 genomes]
rs17364560	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17461551	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2353354	0.82[ASN][1000 genomes]
rs2353355	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3757381	0.85[ASN][1000 genomes]
rs3778705	0.83[ASN][1000 genomes]
rs3807155	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3807156	0.87[ASN][1000 genomes]
rs3807157	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55723768	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56092804	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57407834	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58562866	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62485261	0.81[EUR][1000 genomes]
rs62485263	0.85[ASN][1000 genomes]
rs62485264	0.84[ASN][1000 genomes]
rs62487612	0.81[ASN][1000 genomes]
rs62487613	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62487615	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62487616	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62487619	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6467776	0.90[ASN][1000 genomes]
rs6467778	0.90[ASN][1000 genomes]
rs6467780	0.85[ASN][1000 genomes]
rs6963539	0.83[ASN][1000 genomes]
rs6970175	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6974877	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6978524	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs749546	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7795981	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7808392	0.89[ASN][1000 genomes]
rs888609	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9791462	0.83[ASN][1000 genomes]
rs985299	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138146800-138163200	Weak transcription	Aorta	Aorta
2	chr7:138147000-138162200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:138147000-138162400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:138147000-138165000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:138147200-138163200	Weak transcription	Fetal Thymus	thymus
6	chr7:138147200-138168400	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:138147200-138183800	Weak transcription	Primary B cells from cord blood	blood
8	chr7:138147200-138189000	Weak transcription	Thymus	Thymus
9	chr7:138148200-138163000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr7:138148200-138164200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:138149800-138188600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:138153800-138163200	Weak transcription	Left Ventricle	heart
13	chr7:138153800-138166200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:138153800-138184200	Weak transcription	Fetal Stomach	stomach
15	chr7:138154800-138163800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:138154800-138167200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:138155200-138184200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:138156000-138162200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr7:138156000-138165200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:138157000-138165200	Enhancers	Liver	Liver
21	chr7:138157600-138162400	Weak transcription	Fetal Lung	lung
22	chr7:138157600-138163400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:138157600-138163400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:138157600-138164200	Weak transcription	Pancreas	Pancrea
25	chr7:138157600-138191400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr7:138157800-138166800	Weak transcription	Right Atrium	heart
27	chr7:138159400-138163600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr7:138159400-138165400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr7:138159800-138162400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr7:138159800-138163000	Weak transcription	Primary T cells from cord blood	blood
31	chr7:138159800-138163200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr7:138159800-138163800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr7:138160000-138162200	Weak transcription	Brain Substantia Nigra	brain
34	chr7:138160200-138175000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr7:138160600-138162400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr7:138160600-138163000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr7:138160600-138163200	Weak transcription	Ovary	ovary
38	chr7:138160600-138164200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:138160600-138164200	Weak transcription	Lung	lung
40	chr7:138160600-138168400	Weak transcription	Gastric	stomach
41	chr7:138160600-138182200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:138161000-138163200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr7:138161200-138163200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:138161200-138163800	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr7:138161200-138164200	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr7:138161200-138165400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr7:138161400-138162400	Enhancers	A549	lung
48	chr7:138161400-138162800	Enhancers	Fetal Heart	heart
49	chr7:138161400-138163400	Enhancers	GM12878-XiMat	blood
50	chr7:138161400-138163600	Enhancers	Duodenum Mucosa	Duodenum

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