Variant report

Variant	rs10259091
Chromosome Location	chr7:147457110-147457111
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10282687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2177722	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28716224	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs28869855	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73472880	0.93[AMR][1000 genomes]
rs7799501	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147453800-147458600	Weak transcription	Brain Substantia Nigra	brain
2	chr7:147453800-147460600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:147456200-147457600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:147456800-147458800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:147456800-147459200	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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