Variant report
| Variant | rs10259955 |
|---|---|
| Chromosome Location | chr7:147427757-147427758 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10085572 | 1.00[CEU][hapmap] |
| rs10155998 | 1.00[CHB][hapmap];1.00[GIH][hapmap] |
| rs10156108 | 1.00[CHB][hapmap] |
| rs10229178 | 0.91[ASN][1000 genomes] |
| rs10231699 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap] |
| rs10245935 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10252313 | 1.00[CEU][hapmap] |
| rs10253551 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap] |
| rs10254338 | 1.00[CEU][hapmap] |
| rs10264316 | 1.00[CEU][hapmap] |
| rs10278677 | 1.00[CEU][hapmap] |
| rs10488353 | 1.00[CEU][hapmap] |
| rs10952708 | 1.00[CHB][hapmap];0.95[ASN][1000 genomes] |
| rs10952709 | 1.00[CHB][hapmap] |
| rs10952710 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10952713 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11766799 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11971275 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12155395 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12539452 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12666318 | 1.00[CHB][hapmap] |
| rs1525256 | 1.00[CEU][hapmap] |
| rs1525258 | 1.00[CEU][hapmap] |
| rs16883690 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16883720 | 1.00[CEU][hapmap] |
| rs17170691 | 1.00[CEU][hapmap] |
| rs17170714 | 1.00[CEU][hapmap] |
| rs17170743 | 1.00[CEU][hapmap] |
| rs2049469 | 1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs2080155 | 1.00[CEU][hapmap] |
| rs2373272 | 1.00[CEU][hapmap] |
| rs2888516 | 1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs4726890 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6953679 | 1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs6977961 | 1.00[CEU][hapmap] |
| rs73458209 | 1.00[ASN][1000 genomes] |
| rs73458234 | 1.00[ASN][1000 genomes] |
| rs73472857 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7799600 | 1.00[CHB][hapmap];0.87[GIH][hapmap] |
| rs7809690 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs954112 | 1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv275461 | chr7:147427757-147436087 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
