Variant report

Variant	rs10260022
Chromosome Location	chr7:101830361-101830362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10215830	1.00[MEX][hapmap]
rs10235870	1.00[ASW][hapmap];0.88[LWK][hapmap];0.80[MKK][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241766	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252860	0.92[YRI][hapmap]
rs10259866	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268463	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268506	1.00[CHB][hapmap]
rs10269192	1.00[AMR][1000 genomes]
rs17132157	1.00[MEX][hapmap]
rs17134996	1.00[MEX][hapmap]
rs56277217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6953505	0.92[YRI][hapmap]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101797200-101832000	Weak transcription	Fetal Heart	heart
2	chr7:101797800-101852200	Weak transcription	NHEK	skin
3	chr7:101800400-101850000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:101800600-101851800	Strong transcription	Fetal Intestine Small	intestine
5	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:101805400-101862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:101808200-101840200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:101808400-101868400	Strong transcription	Thymus	Thymus
9	chr7:101812400-101860800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:101812600-101863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:101812600-101867000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr7:101812600-101867000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:101813200-101852000	Weak transcription	NHDF-Ad	bronchial
14	chr7:101813400-101832000	Strong transcription	Fetal Stomach	stomach
15	chr7:101813600-101832200	Weak transcription	NHLF	lung
16	chr7:101813800-101860800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:101814000-101837000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:101814000-101863600	Weak transcription	HUVEC	blood vessel
19	chr7:101814200-101858600	Weak transcription	Right Atrium	heart
20	chr7:101814400-101840200	Weak transcription	NH-A	brain
21	chr7:101814600-101837200	Weak transcription	HSMM	muscle
22	chr7:101814600-101840200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:101816000-101832800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr7:101816000-101859800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:101817000-101835400	Weak transcription	K562	blood
26	chr7:101817200-101851200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr7:101819600-101832800	Weak transcription	Fetal Brain Male	brain
28	chr7:101819600-101837400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:101819800-101832800	Weak transcription	Brain Substantia Nigra	brain
30	chr7:101820600-101830800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:101820600-101838600	Strong transcription	Fetal Intestine Large	intestine
32	chr7:101820600-101860200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr7:101820800-101830600	Strong transcription	Lung	lung
34	chr7:101821000-101830800	Strong transcription	Placenta Amnion	Placenta Amnion
35	chr7:101821200-101830800	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:101821200-101857200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr7:101821400-101830800	Strong transcription	Liver	Liver
38	chr7:101822200-101833200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr7:101822200-101833200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr7:101822200-101833400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr7:101822800-101832800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:101823200-101832800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr7:101823200-101832800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr7:101823200-101833200	Weak transcription	Brain Anterior Caudate	brain
45	chr7:101823200-101833200	Weak transcription	GM12878-XiMat	blood
46	chr7:101823400-101832800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:101823400-101832800	Weak transcription	Fetal Brain Female	brain
48	chr7:101823400-101833000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:101823400-101833000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr7:101823400-101833000	Weak transcription	Hela-S3	cervix

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