Variant report

Variant	rs10260097
Chromosome Location	chr7:6631414-6631415
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:6614342..6622557-chr7:6625132..6631922,18	K562	blood:
2	chr7:6615687..6618664-chr7:6627812..6632591,8	MCF-7	breast:
3	chr7:6627960..6631587-chr7:6636185..6643600,9	MCF-7	breast:
4	chr7:6629715..6632730-chr7:6637377..6639993,3	K562	blood:
5	chr7:6627001..6634994-chr7:6673643..6681623,15	MCF-7	breast:
6	chr7:6626891..6631454-chr7:6676260..6679154,6	K562	blood:

Variant related genes	Relation type
ENSG00000146576	Chromatin interaction
ENSG00000136247	Chromatin interaction
ENSG00000205903	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10232978	1.00[AMR][1000 genomes]
rs10243430	1.00[AMR][1000 genomes]
rs10252323	1.00[AMR][1000 genomes]
rs10254971	1.00[AMR][1000 genomes]
rs10261430	1.00[AMR][1000 genomes]
rs10280892	1.00[AMR][1000 genomes]
rs10281166	1.00[AMR][1000 genomes]
rs28415608	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28446342	1.00[AMR][1000 genomes]
rs28460290	1.00[AMR][1000 genomes]
rs28662216	1.00[AMR][1000 genomes]
rs73344937	1.00[AMR][1000 genomes]
rs73344939	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
2	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
4	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
6	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv830895	chr7:6514781-6722092	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	nsv887429	chr7:6520676-6659509	Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv887430	chr7:6520676-6668027	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
10	nsv508444	chr7:6534110-6700527	Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
11	nsv1025220	chr7:6534278-6736802	Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
12	nsv538717	chr7:6534278-6736802	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
13	nsv887431	chr7:6535517-6690240	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
14	nsv515978	chr7:6535517-6698905	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
15	nsv887432	chr7:6535517-6713985	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
16	nsv887433	chr7:6557135-6668027	Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
17	nsv887434	chr7:6557135-6713985	Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
18	nsv606001	chr7:6563109-6683454	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
19	nsv606002	chr7:6567114-6713985	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
20	nsv887435	chr7:6613604-6713985	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
21	nsv824002	chr7:6618087-6716961	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
22	nsv824003	chr7:6620920-6721409	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
23	nsv887436	chr7:6626922-6721661	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
24	esv1797143	chr7:6628177-6705439	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
25	nsv606003	chr7:6628242-6713985	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6630600-6631600	Enhancers	Small Intestine	intestine
2	chr7:6630600-6634000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:6630600-6641800	Weak transcription	NHDF-Ad	bronchial
4	chr7:6630800-6631600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:6630800-6631600	Enhancers	Primary B cells from cord blood	blood
6	chr7:6630800-6631600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:6630800-6631600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr7:6630800-6631600	Enhancers	Fetal Brain Male	brain
9	chr7:6630800-6631800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr7:6630800-6631800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr7:6630800-6632000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:6630800-6632000	Weak transcription	Ovary	ovary
13	chr7:6630800-6632200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:6630800-6632200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:6630800-6632200	Weak transcription	Brain Angular Gyrus	brain
16	chr7:6630800-6632400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:6630800-6632400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:6630800-6632400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:6630800-6632400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:6630800-6632400	Weak transcription	Colonic Mucosa	Colon
21	chr7:6630800-6632400	Weak transcription	Right Ventricle	heart
22	chr7:6630800-6632400	Weak transcription	Spleen	Spleen
23	chr7:6630800-6632400	Weak transcription	HSMMtube	muscle
24	chr7:6630800-6632600	Weak transcription	Fetal Kidney	kidney
25	chr7:6630800-6633200	Weak transcription	Esophagus	oesophagus
26	chr7:6630800-6633400	Weak transcription	Osteobl	bone
27	chr7:6630800-6633800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:6630800-6633800	Weak transcription	Gastric	stomach
29	chr7:6630800-6634000	Weak transcription	Aorta	Aorta
30	chr7:6630800-6634000	Weak transcription	Psoas Muscle	Psoas
31	chr7:6630800-6634800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr7:6630800-6636200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:6630800-6639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr7:6630800-6641600	Weak transcription	K562	blood
35	chr7:6631000-6631600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:6631000-6631800	Enhancers	HepG2	liver
37	chr7:6631000-6632000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:6631000-6632000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:6631000-6632000	Weak transcription	Brain Germinal Matrix	brain
40	chr7:6631000-6632200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr7:6631000-6632400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr7:6631000-6632400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr7:6631000-6632400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr7:6631000-6632400	Weak transcription	Adipose Nuclei	Adipose
45	chr7:6631000-6632400	Weak transcription	Colon Smooth Muscle	Colon
46	chr7:6631000-6632400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr7:6631000-6632400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr7:6631000-6632400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr7:6631000-6632400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr7:6631000-6632600	Weak transcription	Fetal Brain Female	brain

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