Variant report

Variant	rs10260172
Chromosome Location	chr7:137970793-137970794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10246131	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17361616	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17458992	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2882952	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2882979	0.80[ASN][1000 genomes]
rs2882980	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34905915	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6961770	0.85[AFR][1000 genomes]
rs765274	0.82[AFR][1000 genomes]
rs7793404	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029101	chr7:137952620-138005671	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv517949	chr7:137962186-137992969	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137953000-137974000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:137963800-137973600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:137968600-137971200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr7:137969200-137971400	Enhancers	HepG2	liver
5	chr7:137970000-137971800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:137970600-137970800	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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