Variant report

Variant	rs10260689
Chromosome Location	chr7:137752354-137752355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10227099	1.00[AMR][1000 genomes]
rs10229164	1.00[AMR][1000 genomes]
rs10230284	1.00[AMR][1000 genomes]
rs10230440	1.00[AMR][1000 genomes]
rs10231078	1.00[AMR][1000 genomes]
rs10236488	1.00[AMR][1000 genomes]
rs10258807	1.00[AMR][1000 genomes]
rs10263802	1.00[AMR][1000 genomes]
rs10264483	1.00[AMR][1000 genomes]
rs10276854	1.00[AMR][1000 genomes]
rs10276951	1.00[AMR][1000 genomes]
rs10279265	1.00[AMR][1000 genomes]
rs17169511	1.00[AMR][1000 genomes]
rs28547527	1.00[AMR][1000 genomes]
rs28587485	1.00[AMR][1000 genomes]
rs7799130	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137750000-137752400	Active TSS	Fetal Intestine Large	intestine
2	chr7:137750000-137756200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:137750000-137756400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:137750200-137756000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:137751000-137753600	Flanking Active TSS	HepG2	liver
6	chr7:137751200-137754000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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