Variant report

Variant	rs10261693
Chromosome Location	chr7:147713218-147713219
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10224783	0.92[YRI][hapmap]
rs10227836	0.83[YRI][hapmap]
rs10253762	0.80[YRI][hapmap]
rs10256166	0.92[YRI][hapmap]
rs10261595	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264877	0.82[YRI][hapmap]
rs10264988	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10269138	0.81[EUR][1000 genomes]
rs10269250	0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs10269257	0.84[YRI][hapmap];0.81[EUR][1000 genomes]
rs10270778	0.82[YRI][hapmap]
rs10273493	0.92[AFR][1000 genomes]
rs10276996	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279557	0.82[YRI][hapmap];0.87[AFR][1000 genomes]
rs10280388	0.88[YRI][hapmap]
rs10485853	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11972972	0.86[YRI][hapmap];0.92[AFR][1000 genomes]
rs11974390	0.82[YRI][hapmap];0.86[AFR][1000 genomes]
rs11976838	0.89[AFR][1000 genomes]
rs12532213	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12536135	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12539425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12539685	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs12540049	0.89[JPT][hapmap]
rs12540218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12667149	0.84[YRI][hapmap]
rs12667420	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs12674206	0.88[YRI][hapmap]
rs12703988	0.85[YRI][hapmap]
rs13225246	0.94[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13228312	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs13228553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13233277	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs13236734	0.94[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13236937	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs17170792	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17170793	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17170794	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2373286	0.80[YRI][hapmap]
rs2373289	0.88[YRI][hapmap]
rs28377968	0.86[AFR][1000 genomes]
rs28394241	0.86[AFR][1000 genomes]
rs28554472	0.86[AFR][1000 genomes]
rs28594409	0.86[AFR][1000 genomes]
rs34024797	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34378091	0.91[ASN][1000 genomes]
rs34910390	0.93[ASN][1000 genomes]
rs34987081	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35100395	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35294118	0.97[ASN][1000 genomes]
rs35631331	0.93[ASN][1000 genomes]
rs36041591	0.91[ASN][1000 genomes]
rs4726904	0.82[YRI][hapmap]
rs4726905	0.85[YRI][hapmap]
rs4726906	0.80[YRI][hapmap]
rs4726907	0.85[YRI][hapmap]
rs57783871	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58083908	0.85[AFR][1000 genomes]
rs58092267	0.92[AFR][1000 genomes]
rs58526779	0.92[AFR][1000 genomes]
rs58848818	0.92[AFR][1000 genomes]
rs60119393	0.88[AFR][1000 genomes]
rs60692572	0.90[AFR][1000 genomes]
rs62473287	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62473289	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62473290	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6955458	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6957073	0.95[JPT][hapmap]
rs6970931	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs719310	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs719311	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs719312	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73466110	0.86[AFR][1000 genomes]
rs73466115	0.84[AFR][1000 genomes]
rs73466190	0.92[AFR][1000 genomes]
rs73466195	0.83[AFR][1000 genomes]
rs7779961	0.85[JPT][hapmap]
rs7780623	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7781064	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781680	0.80[JPT][hapmap]
rs7785350	0.85[JPT][hapmap]
rs7800075	0.85[JPT][hapmap]
rs7805706	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147709200-147717800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:147709600-147718400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:147711600-147716400	Enhancers	Fetal Lung	lung
4	chr7:147712400-147713600	Enhancers	Placenta	Placenta
5	chr7:147713200-147713400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:147713200-147713400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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