Variant report

Variant	rs10262164
Chromosome Location	chr7:137298600-137298601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137297411..137300337-chr7:137300736..137303081,2	K562	blood:
2	chr7:137297007..137298885-chr7:137300621..137303566,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10225653	1.00[EUR][1000 genomes]
rs10246705	1.00[EUR][1000 genomes]
rs10246933	1.00[EUR][1000 genomes]
rs10255024	1.00[EUR][1000 genomes]
rs10255560	0.93[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267971	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10272169	1.00[EUR][1000 genomes]
rs10275097	1.00[EUR][1000 genomes]
rs11489681	1.00[EUR][1000 genomes]
rs11971088	1.00[EUR][1000 genomes]
rs13438478	1.00[EUR][1000 genomes]
rs28366575	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28386845	1.00[EUR][1000 genomes]
rs28394651	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28447315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28454188	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28477975	1.00[EUR][1000 genomes]
rs28568341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28650094	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666460	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28787723	1.00[EUR][1000 genomes]
rs3778786	1.00[EUR][1000 genomes]
rs3778789	1.00[EUR][1000 genomes]
rs6467711	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6467712	1.00[EUR][1000 genomes]
rs6947756	1.00[EUR][1000 genomes]
rs6963303	1.00[EUR][1000 genomes]
rs6971321	1.00[EUR][1000 genomes]
rs6971485	0.92[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6971557	1.00[EUR][1000 genomes]
rs6977485	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6977795	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706573	1.00[EUR][1000 genomes]
rs706577	1.00[EUR][1000 genomes]
rs7788632	1.00[EUR][1000 genomes]
rs7811058	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811524	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137277200-137326800	Weak transcription	Osteobl	bone
2	chr7:137277400-137312000	Weak transcription	Brain Angular Gyrus	brain
3	chr7:137277600-137315400	Weak transcription	NH-A	brain
4	chr7:137278400-137304200	Weak transcription	Aorta	Aorta
5	chr7:137282800-137337400	Weak transcription	HSMMtube	muscle
6	chr7:137283400-137302600	Weak transcription	HSMM	muscle
7	chr7:137288000-137310800	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:137294000-137328400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:137296600-137308200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:137297000-137299400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:137297600-137311400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:137297600-137324200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:137298000-137302400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:137298200-137302200	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links