Variant report

Variant	rs10262655
Chromosome Location	chr7:104480132-104480133
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10216243	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10226456	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10226802	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10227564	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10235696	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10236552	0.85[EUR][1000 genomes]
rs10238498	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10243336	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10243529	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10247246	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10250365	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10257360	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10259925	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10264318	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10272668	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10273609	0.81[ASN][1000 genomes]
rs10274240	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10280365	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10281485	0.85[EUR][1000 genomes]
rs10953454	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10953455	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12535201	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12670275	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12705281	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705282	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12705285	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13233998	0.86[EUR][1000 genomes]
rs1468813	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17777379	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17777439	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2285533	0.85[EUR][1000 genomes]
rs28546781	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28587189	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34083033	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34171467	0.85[EUR][1000 genomes]
rs34439336	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34508498	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35146170	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35324592	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35337480	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35756879	0.85[EUR][1000 genomes]
rs35894637	0.86[ASN][1000 genomes]
rs35988800	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4351347	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6963979	0.86[ASN][1000 genomes]
rs6968540	0.84[ASN][1000 genomes]
rs71562620	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71562621	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71562626	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7781864	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv429792	chr7:104400049-104488049	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5887	chr7:104401250-104491604	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv522743	chr7:104411273-104486707	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv437560	chr7:104461487-104482321	Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104440400-104482400	Weak transcription	Fetal Intestine Small	intestine
2	chr7:104466000-104486800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:104476400-104503000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:104478200-104481400	Weak transcription	Fetal Intestine Large	intestine
5	chr7:104478600-104480200	Enhancers	Primary hematopoietic stem cells	blood
6	chr7:104478600-104480200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:104479600-104488800	Weak transcription	Colon Smooth Muscle	Colon

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