Variant report

Variant	rs1026394
Chromosome Location	chr4:80108181-80108182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10013555	0.88[ASN][1000 genomes]
rs10032360	0.89[ASN][1000 genomes]
rs10032363	0.89[ASN][1000 genomes]
rs1080690	0.84[ASN][1000 genomes]
rs11098588	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11098595	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11098603	0.89[ASN][1000 genomes]
rs11098609	1.00[JPT][hapmap];0.80[TSI][hapmap]
rs11732616	0.89[ASN][1000 genomes]
rs11735553	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12502459	0.96[ASN][1000 genomes]
rs12504676	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12643994	0.93[ASN][1000 genomes]
rs12644018	0.90[ASN][1000 genomes]
rs12648205	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12650537	0.84[ASN][1000 genomes]
rs13143413	0.88[ASN][1000 genomes]
rs13145326	0.95[ASN][1000 genomes]
rs1385055	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1455313	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1840480	0.93[ASN][1000 genomes]
rs1955232	0.84[ASN][1000 genomes]
rs28528138	0.83[ASN][1000 genomes]
rs4246718	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4302482	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4385093	0.89[ASN][1000 genomes]
rs4386626	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4425403	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4470657	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4502706	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4519821	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4527507	0.91[ASN][1000 genomes]
rs4530664	0.91[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap]
rs4535355	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4535356	0.86[ASN][1000 genomes]
rs4571359	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4571360	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4639097	0.80[ASN][1000 genomes]
rs4975079	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4975080	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4975166	0.91[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4975171	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4975172	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4975173	0.89[ASN][1000 genomes]
rs4988619	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56008448	0.84[ASN][1000 genomes]
rs58479998	0.88[ASN][1000 genomes]
rs6534217	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6534218	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6534222	0.84[ASN][1000 genomes]
rs6534253	0.89[ASN][1000 genomes]
rs6810580	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6826553	0.84[ASN][1000 genomes]
rs6826564	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6827253	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6832917	0.89[ASN][1000 genomes]
rs6837864	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6853034	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6855921	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7656444	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7659766	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7667438	0.89[ASN][1000 genomes]
rs7673022	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7676343	0.91[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs7679438	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7694880	0.89[ASN][1000 genomes]
rs7695330	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9307489	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9715410	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9993157	0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1014428	chr4:80089712-80132813	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80106600-80108600	Weak transcription	Fetal Brain Female	brain

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