Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137761079..137762998-chr7:137763211..137766028,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122787	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10227099	0.82[YRI][hapmap]
rs10229164	0.82[YRI][hapmap]
rs10231078	0.82[YRI][hapmap]
rs10232506	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236609	1.00[AMR][1000 genomes]
rs10242671	1.00[AMR][1000 genomes]
rs10249301	1.00[AMR][1000 genomes]
rs10250005	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10266425	1.00[AMR][1000 genomes]
rs10266565	1.00[AMR][1000 genomes]
rs10268709	1.00[AMR][1000 genomes]
rs10276142	1.00[AMR][1000 genomes]
rs10276854	0.82[YRI][hapmap]
rs10279427	1.00[AMR][1000 genomes]
rs10281914	1.00[AMR][1000 genomes]
rs13362852	1.00[AMR][1000 genomes]
rs28650966	1.00[AMR][1000 genomes]
rs28675865	1.00[AMR][1000 genomes]
rs28687061	1.00[AMR][1000 genomes]
rs28691233	1.00[AMR][1000 genomes]
rs28735498	1.00[AMR][1000 genomes]
rs28841352	1.00[AMR][1000 genomes]
rs73732228	1.00[AMR][1000 genomes]
rs73732229	1.00[AMR][1000 genomes]
rs7799130	0.82[YRI][hapmap]
rs7810602	1.00[AMR][1000 genomes]
rs9655904	1.00[AMR][1000 genomes]
rs9656503	1.00[AMR][1000 genomes]
rs9692029	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv437032	chr7:137753091-137773291	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137761200-137763600	Enhancers	HepG2	liver
2	chr7:137762000-137765000	Flanking Active TSS	Liver	Liver
3	chr7:137762400-137763600	Enhancers	Hela-S3	cervix

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