Variant report

Variant	rs10265175
Chromosome Location	chr7:122320038-122320039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:122319351-122320205	HepG2	liver:	n/a	n/a
2	NR2F2	chr7:122319287-122320336	HepG2	liver:	n/a	n/a
3	TEAD4	chr7:122319129-122320198	HepG2	liver:	n/a	n/a
4	ARID3A	chr7:122319336-122320305	HepG2	liver:	n/a	n/a
5	CHD1	chr7:122319991-122320043	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr7:122319323-122320387	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
RPS26P31	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10046586	1.00[AMR][1000 genomes]
rs10256337	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268190	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10268368	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12706426	1.00[CEU][hapmap]
rs12706427	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12706434	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13221540	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13222266	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13223497	1.00[AMR][1000 genomes]
rs13224171	1.00[AMR][1000 genomes]
rs13226270	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13226382	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13230792	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13237142	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs13239569	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13247906	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2159825	1.00[AMR][1000 genomes]
rs28403443	1.00[AMR][1000 genomes]
rs28449483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28459977	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28550991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28635203	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34089631	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34125908	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34148286	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34927994	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35186619	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35286197	0.84[AMR][1000 genomes]
rs35628062	0.89[EUR][1000 genomes]
rs35986281	0.87[EUR][1000 genomes]
rs36199141	0.91[AMR][1000 genomes]
rs4283984	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs6466830	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71574711	0.89[EUR][1000 genomes]
rs71574712	0.89[EUR][1000 genomes]
rs71574713	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71574714	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71574716	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71574717	0.91[AMR][1000 genomes]
rs7779064	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7789775	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122314800-122322800	Weak transcription	Right Atrium	heart
2	chr7:122315400-122322200	Weak transcription	Fetal Lung	lung
3	chr7:122316600-122320200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:122316800-122320400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:122316800-122320400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:122316800-122322800	Weak transcription	Left Ventricle	heart
7	chr7:122317600-122326600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:122317600-122327000	Weak transcription	Fetal Stomach	stomach
9	chr7:122318800-122322200	Weak transcription	Gastric	stomach
10	chr7:122318800-122322800	Weak transcription	Pancreas	Pancrea
11	chr7:122318800-122323200	Weak transcription	Lung	lung
12	chr7:122318800-122325200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:122319000-122322800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:122319000-122324800	Weak transcription	Stomach Mucosa	stomach
15	chr7:122319200-122320400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:122319200-122323200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:122319600-122320200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr7:122319600-122320400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:122319600-122320400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:122319800-122320200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr7:122319800-122320600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
22	chr7:122320000-122320200	Active TSS	Duodenum Mucosa	Duodenum
23	chr7:122320000-122320400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr7:122320000-122320400	Flanking Active TSS	HepG2	liver
25	chr7:122320000-122320600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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