Variant report

Variant	rs10265258
Chromosome Location	chr7:126634099-126634100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1003036	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs1010517	0.81[JPT][hapmap]
rs10234281	0.83[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10236120	0.87[JPT][hapmap]
rs10236204	0.87[JPT][hapmap]
rs10236227	0.82[JPT][hapmap]
rs10275501	0.88[JPT][hapmap]
rs10487463	0.84[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs1121874	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs11496163	0.87[ASN][1000 genomes]
rs1154324	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1154325	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1155597	0.89[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1155656	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11563513	0.87[JPT][hapmap]
rs11563801	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs1204563	0.89[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1204567	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs1204569	0.89[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1204579	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs1204583	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs1204588	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs1204593	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1204594	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1211384	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs12164089	0.88[JPT][hapmap]
rs1361968	0.82[JPT][hapmap]
rs1419438	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1419465	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs1419468	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1419469	0.86[ASN][1000 genomes]
rs1419470	0.83[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1419471	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1548766	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs1582255	0.86[ASN][1000 genomes]
rs2067052	0.89[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2072416	0.89[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2106188	0.88[JPT][hapmap]
rs2188188	0.82[JPT][hapmap]
rs2237776	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2518954	0.88[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2518955	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs2535926	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs2535932	0.83[JPT][hapmap]
rs2535938	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2535939	0.83[CHB][hapmap]
rs2535943	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2535944	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3808136	0.88[JPT][hapmap]
rs3808142	0.89[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs4728057	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs6950713	0.83[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs6975379	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs992169	0.89[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv889188	chr7:126620555-126646353	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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