Variant report

Variant	rs10266326
Chromosome Location	chr7:101514885-101514886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101511680..101514939-chr7:101582566..101587455,5	MCF-7	breast:
2	chr7:101508293..101510760-chr7:101510780..101514938,6	K562	blood:
3	chr7:101500011..101500821-chr7:101513849..101515178,4	MCF-7	breast:
4	chr7:101512493..101515121-chr7:101518914..101521779,2	MCF-7	breast:
5	chr7:101506592..101509232-chr7:101513359..101515951,2	MCF-7	breast:
6	chr7:101514362..101515990-chr7:101615042..101617037,2	MCF-7	breast:
7	chr7:101512988..101516254-chr7:101522807..101526538,9	MCF-7	breast:
8	chr7:101514433..101518580-chr7:101582721..101585796,4	MCF-7	breast:
9	chr7:101513234..101515852-chr7:101521619..101524007,2	MCF-7	breast:
10	chr7:101512554..101516171-chr7:101524650..101528130,5	MCF-7	breast:
11	chr7:101512083..101520283-chr7:101521327..101527237,12	K562	blood:
12	chr7:101514608..101516122-chr7:101525582..101528029,2	K562	blood:
13	chr7:101499493..101501322-chr7:101514086..101515817,2	K562	blood:
14	chr7:101457997..101461675-chr7:101512950..101515695,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10224064	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10229003	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245008	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261568	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10275899	0.81[AFR][1000 genomes]
rs11768899	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2410921	0.81[AFR][1000 genomes]
rs2970497	0.85[ASN][1000 genomes]
rs4727511	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4729755	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4729758	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6978555	0.81[ASN][1000 genomes]
rs6979596	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101501000-101517600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:101501000-101523600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr7:101501000-101525000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:101503400-101517400	Weak transcription	Primary B cells from cord blood	blood
5	chr7:101504800-101518200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:101509000-101522600	Weak transcription	Primary T cells from cord blood	blood
7	chr7:101509200-101517200	Weak transcription	Dnd41	blood
8	chr7:101509200-101517200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:101510600-101515000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:101510600-101515000	Enhancers	Pancreas	Pancrea
11	chr7:101510600-101515000	Enhancers	Right Ventricle	heart
12	chr7:101511400-101515000	Enhancers	Fetal Heart	heart
13	chr7:101511400-101515000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr7:101511400-101515000	Enhancers	K562	blood
15	chr7:101511400-101515200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:101511600-101519000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:101511600-101523400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr7:101511800-101515000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr7:101511800-101515000	Enhancers	Placenta	Placenta
20	chr7:101511800-101523600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr7:101512200-101524000	Weak transcription	NHLF	lung
22	chr7:101512600-101515000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:101512600-101515000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:101512600-101515200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:101513200-101515200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:101513200-101523600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr7:101513400-101515000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr7:101513400-101517400	Weak transcription	Fetal Brain Female	brain
29	chr7:101513400-101517800	Weak transcription	Right Atrium	heart
30	chr7:101513400-101523400	Weak transcription	Small Intestine	intestine
31	chr7:101513600-101517400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:101513600-101522600	Weak transcription	Liver	Liver
33	chr7:101513600-101525200	Weak transcription	Spleen	Spleen
34	chr7:101513800-101517000	Weak transcription	Fetal Muscle Leg	muscle
35	chr7:101513800-101517200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:101513800-101517200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr7:101513800-101517200	Weak transcription	Osteobl	bone
38	chr7:101513800-101517400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:101513800-101518200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr7:101514000-101515000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:101514000-101515000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr7:101514000-101515000	Genic enhancers	Fetal Thymus	thymus
43	chr7:101514000-101515000	Enhancers	Psoas Muscle	Psoas
44	chr7:101514000-101517200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr7:101514000-101517200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:101514000-101517200	Weak transcription	Fetal Lung	lung
47	chr7:101514000-101517200	Weak transcription	HSMM	muscle
48	chr7:101514000-101517600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr7:101514000-101517600	Weak transcription	Brain Substantia Nigra	brain
50	chr7:101514000-101517800	Weak transcription	Brain Angular Gyrus	brain

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