Variant report

Variant	rs10266565
Chromosome Location	chr7:137894219-137894220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10232506	1.00[AMR][1000 genomes]
rs10235317	1.00[AMR][1000 genomes]
rs10242671	1.00[AMR][1000 genomes]
rs10249301	1.00[AMR][1000 genomes]
rs10250005	1.00[AMR][1000 genomes]
rs10258577	1.00[AMR][1000 genomes]
rs10264216	1.00[AMR][1000 genomes]
rs10266425	1.00[AMR][1000 genomes]
rs10268709	1.00[AMR][1000 genomes]
rs10276142	1.00[AMR][1000 genomes]
rs10281914	1.00[AMR][1000 genomes]
rs28650966	1.00[AMR][1000 genomes]
rs28687061	1.00[AMR][1000 genomes]
rs28691233	1.00[AMR][1000 genomes]
rs28735498	1.00[AMR][1000 genomes]
rs28841352	1.00[AMR][1000 genomes]
rs73732228	1.00[AMR][1000 genomes]
rs73732229	1.00[AMR][1000 genomes]
rs7810602	1.00[AMR][1000 genomes]
rs9656503	1.00[AMR][1000 genomes]
rs9692029	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137892000-137894400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:137892000-137894400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:137892000-137895400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:137892400-137894400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:137892400-137894400	Enhancers	Liver	Liver
6	chr7:137893200-137894400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:137893200-137894600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:137893200-137894600	Enhancers	Pancreas	Pancrea
9	chr7:137893600-137894400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:137893600-137894600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr7:137893800-137894400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:137893800-137905200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:137894000-137895000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr7:137894000-137895800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:137894000-137896800	Weak transcription	HepG2	liver
16	chr7:137894200-137894400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:137894200-137894600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:137894200-137895400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr7:137894200-137902400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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