Variant report

Variant	rs10266871
Chromosome Location	chr7:104812129-104812130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104807148..104809594-chr7:104811696..104814300,3	K562	blood:
2	chr7:104807148..104809035-chr7:104811696..104814042,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10238507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs10241415	0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs10277120	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[ASN][1000 genomes]
rs10281422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10281886	0.82[ASN][1000 genomes]
rs10487150	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10953468	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs10953470	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs1142	0.90[CEU][hapmap];0.88[JPT][hapmap]
rs1144	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs11760317	0.94[YRI][hapmap]
rs1204056	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs1204058	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs1204066	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs1204077	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs1204080	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12334245	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs12668040	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs13235033	0.94[JPT][hapmap]
rs13238191	0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs17721873	0.93[JPT][hapmap]
rs2030776	0.95[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs2040914	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs2057883	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2057884	0.82[CEU][hapmap];0.89[GIH][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap]
rs2192932	0.91[ASW][hapmap];0.90[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap]
rs2237612	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs2237613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2237617	0.87[JPT][hapmap]
rs2240463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs2299304	0.90[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap]
rs2299308	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];0.84[ASN][1000 genomes]
rs2299319	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap]
rs3779210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs3801278	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap]
rs3801281	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3801282	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs3801285	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs3823752	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs41562	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs41563	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs4730072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[ASN][1000 genomes]
rs4730073	0.83[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs4730080	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6466053	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap]
rs6466056	0.82[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs6466057	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs6943183	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.84[ASN][1000 genomes]
rs6948885	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs6950620	0.91[ASW][hapmap];0.90[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs6962856	0.95[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs6967587	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7797912	0.83[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7806591	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs917114	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104678000-104812200	Strong transcription	Dnd41	blood
2	chr7:104753800-104822000	Weak transcription	Small Intestine	intestine
3	chr7:104754400-104850400	Weak transcription	Fetal Kidney	kidney
4	chr7:104780000-104818800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:104780200-104818800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:104782600-104814000	Weak transcription	Colonic Mucosa	Colon
7	chr7:104782800-104845600	Weak transcription	Spleen	Spleen
8	chr7:104784400-104818800	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:104786400-104812200	Weak transcription	Fetal Intestine Small	intestine
10	chr7:104787000-104813800	Weak transcription	Right Atrium	heart
11	chr7:104787600-104813400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:104791000-104813800	Weak transcription	Pancreas	Pancrea
13	chr7:104799800-104813800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:104805000-104818600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:104805800-104813800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:104806400-104812800	Weak transcription	Aorta	Aorta
17	chr7:104806400-104813800	Weak transcription	Gastric	stomach
18	chr7:104806400-104813800	Weak transcription	Psoas Muscle	Psoas
19	chr7:104806400-104814000	Weak transcription	Right Ventricle	heart
20	chr7:104806400-104819000	Weak transcription	Lung	lung
21	chr7:104806400-104838200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:104806600-104836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:104806600-104842000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr7:104807600-104812600	Weak transcription	Brain Hippocampus Middle	brain
25	chr7:104807600-104829800	Weak transcription	Thymus	Thymus
26	chr7:104807800-104813000	Weak transcription	Brain Angular Gyrus	brain
27	chr7:104807800-104815000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:104807800-104816400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr7:104807800-104818800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:104807800-104819800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr7:104808000-104813000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:104808000-104813800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr7:104808000-104815200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:104808000-104819600	Weak transcription	NHEK	skin
35	chr7:104808000-104820600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:104808200-104813800	Weak transcription	Ovary	ovary
37	chr7:104808400-104820600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr7:104808800-104814000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:104808800-104819000	Weak transcription	HepG2	liver
40	chr7:104808800-104822800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:104809000-104813800	Weak transcription	Brain Anterior Caudate	brain
42	chr7:104809000-104819000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr7:104809000-104820400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:104809000-104836600	Weak transcription	HSMM	muscle
45	chr7:104809000-104838800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr7:104809200-104812400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr7:104809200-104813200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr7:104809200-104819000	Weak transcription	Adipose Nuclei	Adipose
49	chr7:104809200-104819800	Weak transcription	Primary T cells from cord blood	blood
50	chr7:104809200-104821800	Weak transcription	A549	lung

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