Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10228901	1.00[AMR][1000 genomes]
rs10229791	1.00[AMR][1000 genomes]
rs10238335	1.00[AMR][1000 genomes]
rs10238929	1.00[AMR][1000 genomes]
rs10243551	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10244187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248746	1.00[AMR][1000 genomes]
rs10250037	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254479	1.00[AMR][1000 genomes]
rs10257455	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10257593	0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10263672	0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268190	0.85[YRI][hapmap]
rs10268368	0.87[YRI][hapmap]
rs10274143	1.00[AMR][1000 genomes]
rs10278021	1.00[AMR][1000 genomes]
rs13221540	0.87[YRI][hapmap]
rs13237142	0.87[YRI][hapmap]
rs13239569	0.87[YRI][hapmap]
rs17144625	1.00[CHD][hapmap]
rs28517374	1.00[AMR][1000 genomes]
rs4283984	1.00[YRI][hapmap]
rs6944720	1.00[AMR][1000 genomes]
rs6949494	1.00[AMR][1000 genomes]
rs6963572	1.00[AMR][1000 genomes]
rs7789775	0.87[YRI][hapmap]
rs7792270	1.00[AMR][1000 genomes]
rs7798392	1.00[AMR][1000 genomes]
rs7810196	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv817238	chr7:122325864-122371594	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122329600-122343400	Weak transcription	Ovary	ovary
2	chr7:122330000-122343000	Weak transcription	Spleen	Spleen
3	chr7:122330000-122347000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:122332800-122342200	Weak transcription	Left Ventricle	heart
5	chr7:122333000-122350400	Weak transcription	Gastric	stomach
6	chr7:122336400-122347600	Weak transcription	Fetal Lung	lung
7	chr7:122336600-122342000	Weak transcription	Pancreas	Pancrea
8	chr7:122336600-122347000	Weak transcription	HepG2	liver
9	chr7:122336600-122359000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:122336800-122340000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:122338800-122342400	Weak transcription	Lung	lung

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