Variant report

Variant	rs10268190
Chromosome Location	chr7:122361000-122361001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10046586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10228901	0.87[YRI][hapmap]
rs10235266	0.87[YRI][hapmap]
rs10243551	1.00[YRI][hapmap]
rs10256337	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10257455	1.00[YRI][hapmap]
rs10257593	1.00[YRI][hapmap]
rs10263672	1.00[YRI][hapmap]
rs10265175	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10267961	0.85[YRI][hapmap]
rs10268368	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs10278021	0.87[YRI][hapmap]
rs12706426	1.00[CEU][hapmap]
rs12706427	1.00[CEU][hapmap]
rs12706434	1.00[AMR][1000 genomes]
rs13221540	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13222266	0.91[AMR][1000 genomes]
rs13223497	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13224171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13226270	1.00[AMR][1000 genomes]
rs13226382	1.00[AMR][1000 genomes]
rs13230792	1.00[AMR][1000 genomes]
rs13237142	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13239569	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13247906	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs2159825	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28403443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28449483	1.00[AMR][1000 genomes]
rs28459977	0.91[AMR][1000 genomes]
rs28550991	1.00[AMR][1000 genomes]
rs28635203	1.00[AMR][1000 genomes]
rs34089631	0.91[AMR][1000 genomes]
rs34125908	1.00[AMR][1000 genomes]
rs34148286	0.91[AMR][1000 genomes]
rs34927994	0.91[AMR][1000 genomes]
rs35186619	0.91[AMR][1000 genomes]
rs35286197	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36199141	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4283984	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6466830	1.00[AMR][1000 genomes]
rs6944720	0.87[YRI][hapmap]
rs6949494	0.85[YRI][hapmap]
rs6963572	0.87[YRI][hapmap]
rs71574713	1.00[AMR][1000 genomes]
rs71574714	0.91[AMR][1000 genomes]
rs71574716	0.91[AMR][1000 genomes]
rs71574717	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7779064	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7789775	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv817238	chr7:122325864-122371594	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv532218	chr7:122360779-122934247	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122359600-122376000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:122359600-122376200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:122359800-122366200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:122359800-122375000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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