Variant report

Variant	rs10268709
Chromosome Location	chr7:137849195-137849196
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10232506	1.00[AMR][1000 genomes]
rs10235317	1.00[AMR][1000 genomes]
rs10236609	1.00[AMR][1000 genomes]
rs10242671	1.00[AMR][1000 genomes]
rs10249301	1.00[AMR][1000 genomes]
rs10250005	1.00[AMR][1000 genomes]
rs10258577	1.00[AMR][1000 genomes]
rs10264216	1.00[AMR][1000 genomes]
rs10266425	1.00[AMR][1000 genomes]
rs10266565	1.00[AMR][1000 genomes]
rs10276142	1.00[AMR][1000 genomes]
rs10279427	1.00[AMR][1000 genomes]
rs10281914	1.00[AMR][1000 genomes]
rs13362852	1.00[AMR][1000 genomes]
rs28650966	1.00[AMR][1000 genomes]
rs28675865	1.00[AMR][1000 genomes]
rs28687061	1.00[AMR][1000 genomes]
rs28691233	1.00[AMR][1000 genomes]
rs28735498	1.00[AMR][1000 genomes]
rs28841352	1.00[AMR][1000 genomes]
rs73732228	1.00[AMR][1000 genomes]
rs73732229	1.00[AMR][1000 genomes]
rs7810602	1.00[AMR][1000 genomes]
rs9656503	1.00[AMR][1000 genomes]
rs9692029	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137846600-137851800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:137847400-137849400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:137848000-137850200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr7:137848000-137850600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr7:137848200-137849800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:137848200-137850600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr7:137848200-137850600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr7:137848200-137850600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr7:137848400-137849600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr7:137848400-137849800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:137848400-137850000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr7:137848400-137850800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
13	chr7:137848600-137850200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
14	chr7:137849000-137849600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:137849000-137849800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:137849000-137849800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:137849000-137849800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:137849000-137849800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:137849000-137850000	ZNF genes & repeats	Liver	Liver

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