Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10248165	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10951603	0.94[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs11971775	0.89[ASN][1000 genomes]
rs12701729	0.84[JPT][hapmap]
rs1558159	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs1990243	0.85[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2074934	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2190893	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs2237400	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2237401	0.85[AFR][1000 genomes]
rs2237411	0.81[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2299135	0.82[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs2299137	0.82[ASN][1000 genomes]
rs2299141	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs2329388	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs2329390	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs2329391	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs2876835	0.87[ASN][1000 genomes]
rs57694192	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60586729	0.89[ASN][1000 genomes]
rs6462916	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs6962623	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs740509	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs7792157	0.80[YRI][hapmap]
rs887013	0.88[ASN][1000 genomes]
rs917401	0.89[CEU][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv981456	chr7:39431071-39454006	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39432400-39439800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:39436400-39445400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:39437600-39446000	Weak transcription	Pancreas	Pancrea
4	chr7:39438800-39441000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr7:39439400-39441200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:39439600-39440200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:39439600-39440600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:39439600-39440800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr7:39439600-39440800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:39439600-39440800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:39439600-39441600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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